Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 1e-28
>seq3
Length=7873615
Score = 141 bits (156), Expect = 1e-28
Identities = 368/556 (66%), Gaps = 10/556 (2%)
Strand=Plus/Plus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
||| ||||||||||| | | ||| | ||||||||||| | || || ||||| |||||
Sbjct 2197006 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2197065
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
|||||| || ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 2197066 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2197125
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCA-CTTTTGAG 42254
||||| |||| ||| | || || || | |||| || ||||| | || |
Sbjct 2197126 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2197184
Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314
||||||| ||||||||| | ||||| || || || | ||| || ||||| || |
Sbjct 2197185 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2197244
Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374
| | || || | || |||||||| | || || |||| || || ||||
Sbjct 2197245 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2197304
Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434
| || || ||||| || || ||||| |||| ||||||| | ||| || || |
Sbjct 2197305 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2197364
Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494
||||| ||| | | || || || || || ||||| ||| || || || || | |
Sbjct 2197365 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2197424
Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTCCAATCATTGATATCTT 42551
|| || || |||| ||||||| || || || ||||| || | || ||| |
Sbjct 2197425 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2197484
Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611
| || | ||| | || || | ||||| || || || |||||||| || ||||| | ||
Sbjct 2197485 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2197544
Query 42612 AGA--TATCATGATAT 42625
||| ||||| || ||
Sbjct 2197545 AGATCTATCAGGAAAT 2197560
Score = 131 bits (144), Expect = 2e-25
Identities = 449/686 (65%), Gaps = 18/686 (3%)
Strand=Plus/Minus
Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763
|| || || || ||||| || ||||||| || || |||| || || ||||||||
Sbjct 1403474 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1403415
Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823
|| || | |||||| || | || | ||| || ||||| || || ||||
Sbjct 1403414 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCC 1403355
Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883
|| || || || || || | ||||| || |||| | || | ||| || | ||| | |
Sbjct 1403354 TTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA-G 1403296
Query 71884 ACTC-GAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATAT 71937
|| ||||||| || | |||| | ||| ||||| ||||| | | ||| |
Sbjct 1403295 CTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1403239
Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-CCAGGACATTCATTCGGACACAT 71996
| | || || ||||| || | ||| | || ||||| ||||| || || |||||
Sbjct 1403238 AGCC--TCAAATTCGTCACCGTA-GCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACAT 1403182
Query 71997 CAATGACCACTCTCCAT-CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055
| | ||| || || | | || | || || ||||| || |||||||| ||||||||||
Sbjct 1403181 GAGAGTCCATTCGCCGTTCCTC-TCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1403123
Query 72056 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115
| | || || || | | | |||||| ||||| |||||| ||||| ||||
Sbjct 1403122 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1403063
Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175
|| | | | || | ||||| || || | ||| ||||| | | || || || ||||
Sbjct 1403062 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGT 1403003
Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235
| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||||
Sbjct 1403002 TACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATAC 1402943
Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295
| ||||| | ||||||||| |||| ||| || ||| ||||||| || | | | |
Sbjct 1402942 CGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCG 1402884
Query 72296 -ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354
|| || || || || ||||| || || || | || || || | ||||| |||
Sbjct 1402883 TTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAG 1402824
Query 72355 ATGCCCTCTATACTATCATCCATCAT 72380
|| || || || || || ||| ||||
Sbjct 1402823 ATACCATCAATGCTGTCCTCCTTCAT 1402798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138981879760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |