Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq3 269 4e-67
>seq3
Length=7873615
Score = 269 bits (298), Expect = 4e-67
Identities = 575/846 (68%), Gaps = 27/846 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| |||||||||| ||||| | || ||| |||||||
Sbjct 2197548 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2197489
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | ||||||||| |||| | | || || ||
Sbjct 2197488 TCCAAGGATCTCCACGACTGGAACAACCGTTTGACTTCGGACGAGCAATACTTCATCTCC 2197429
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
|||||| | || ||||| || | |||||| || |||||||| || || || ||||| ||
Sbjct 2197428 CACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAG-CG 2197370
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256
|||| ||| | || || |||| ||| ||||| || || ||||| |||||||
Sbjct 2197369 ATTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTATGGTTTCCAGATCATGA 2197311
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG- 125315
| |||||| | ||||| |||| ||||| || || || | ||||| || ||
Sbjct 2197310 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 2197251
Query 125316 --CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373
|| |||| | || ||||| ||||| | ||||| | || | || || || ||||
Sbjct 2197250 CCCAGCGTACATAC---CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 2197194
Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433
| | |||| || || |||||| | ||| | || ||||| | || | | || || |
Sbjct 2197193 CGGATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTG 2197134
Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493
| || || ||||| ||||| |||||||| ||| ||||| ||||||| |||||||
Sbjct 2197133 CTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCA 2197074
Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553
||||||| || |||||||| || |||| |||||| | || ||||| || ||||
Sbjct 2197073 AGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGG 2197014
Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613
| || ||| |||||||||| ||| || | ||| | | | | || | |
Sbjct 2197013 GTCTTCACACTGACTTTGCCTGTCTCCT------CCACTCT---CACCTCAAGGGACGTG 2196963
Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673
||||| | | | | || ||||| | ||||||||||| || || || ||||| |
Sbjct 2196962 CCAGCAAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTCC 2196903
Query 125674 TAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732
| ||||| | || || | || || | |||||||||| ||| || ||| |||||
Sbjct 2196902 TCACCGAGGCTCT-CCCTTGTGCTCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTAC 2196844
Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAAC 125789
|| || || || || ||||| || || || | | ||| || ||| | |||||
Sbjct 2196843 ATCGAATTCGTCGCCGATCGCCTCCT---CGTGGCTCTCGGCAACGAGAAGGTGTACAAG 2196787
Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849
||| || || || || |||||| | ||| || || | || ||||||||||| |||
Sbjct 2196786 TCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTC 2196727
Query 125850 GAGAAG 125855
||||||
Sbjct 2196726 GAGAAG 2196721
Score = 127 bits (140), Expect = 3e-24
Identities = 319/477 (67%), Gaps = 12/477 (3%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| || || || || || || || | ||| ||||| | || || |||||||| |||
Sbjct 1402993 CAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCACGCCGAC 1403052
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || | || | || || ||| || || |||| || || | |||
Sbjct 1403053 GTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGCTCGTGAC 1403112
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGT-GGCTA 97054
|||| || || ||| | || ||| | ||||||||||| ||| | || | ||| |
Sbjct 1403113 CTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGA-GAGGAACGGCGA 1403171
Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114
|||| || ||||||||| || | || ||||| | || |||| || || || ||
Sbjct 1403172 ATGGACTCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTGCTACGGTGACGAATT 1403231
Query 97115 TGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| |||||| |||||| || | | | |||| || | |
Sbjct 1403232 TGAGGCTCTGTACGAAAAGTACGAGAGAGAGGG----TAAGGGTCGCAAGTCTATCAAGG 1403287
Query 97175 ---AGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229
|||| || ||| | ||||| | ||| ||| ||| ||||||||||| || | |||
Sbjct 1403288 CTCAGAAGCTTTGGTACGCCATTCTTGA-GGCCCAGACAGAGACTGGAAACCCTTTCATG 1403346
Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289
|||||||||||| | |||||||| ||||||||| || | || |||||| ||
Sbjct 1403347 CTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAGC 1403406
Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
||||| |||||||| || || | || ||| | | || || ||| || ||||||
Sbjct 1403407 TCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGTTTGC 1403463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058959155760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |