Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 399 6e-106 >seq3 Length=7873615 Score = 399 bits (442), Expect = 6e-106 Identities = 1149/1744 (66%), Gaps = 40/1744 (2%) Strand=Plus/Plus Query 363436 GGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGC 363495 ||| | |||| ||| ||||||||||||||| | ||||| || ||| |||| ||| | Sbjct 1402612 GGTAAAATTGCTGAGCGCCCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGT 1402671 Query 363496 CCGGATGTTGATGCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGC 363553 ||| |||| | | || ||||| || || | | | || || | ||||| | Sbjct 1402672 GACGATATTGAGCGTGTCTTGGAGACATACAACCTCATGTCAA-GCAAGT-TCTTCACTC 1402729 Query 363554 ACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTC 363613 | || | || || ||| ||| || || || | | || ||| | || || ||||| | Sbjct 1402730 ATGCGAGCCCCACTTTGTTCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCC 1402789 Query 363614 TTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTC 363673 || | | |||||||| || ||| || ||||||| || || || |||| |||||| Sbjct 1402790 TTGTTGATATGAAGGAGGACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCA 1402849 Query 363674 TTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAAC 363732 | |||||||||| || || || ||||| || |||| | ||||| || | | Sbjct 1402850 TGATTTCCAAGATGGCTGGTGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGG-C 1402908 Query 363733 AGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTT 363791 |||||| ||| || || |||| | || || | ||||||||||| |||||||| Sbjct 1402909 TCTTACATCGCCGGTACCAATGG-TACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTT 1402967 Query 363792 TGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 |||| ||||| | ||||||||||||||||| ||||| || || || || || Sbjct 1402968 CAACAACACTGCTCGTTACGTCGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCAT 1403027 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 || || ||||| || ||||| | || ||||| ||||| ||||| || ||| || Sbjct 1403028 CTACCTTGAGCCATGGCACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGG 1403087 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 ||| ||||| | || || ||||| |||||| || |||||| | |||| | ||| || Sbjct 1403088 AAAGGAGGAGGTCCGCGCTCGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCAT 1403147 Query 363972 GAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGT 364029 |||||| || ||| ||| | | | ||| | ||| | ||||| ||||||| || ||| Sbjct 1403148 GAAGCGTGTCGAG--AGGAACGGCGAATGGACTCTCATGTGCCCCAACGAATGCCCTGGT 1403205 Query 364030 CTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 ||| | || | |||||||| | || ||||| ||||||||||| || ||||| Sbjct 1403206 CTTGCTGACTGCTACGGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGT 1403265 Query 364090 AAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 |||| ||| ||| | || || |||||||| |||| ||||| | || | |||| Sbjct 1403266 AAGGGTCGCAAGTCTATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACA 1403325 Query 364150 GAGACAGGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCA 364208 ||||| |||| ||||| | ||| | ||||| ||| ||||| |||||| |||||| | Sbjct 1403326 GAGACTGGAA-ACCCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAA 1403384 Query 364209 GCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | |||||||||| | || | || |||||| || || ||||| ||||||||| ||| | Sbjct 1403385 GAACCTTGGTACCA-TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCC 1403443 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA------ 364321 | || ||| || || || |||||||| || | | || || | || | | Sbjct 1403444 CTGATGAGGTCGCTGTTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTCATCAACTATG 1403503 Query 364322 AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATC 364381 |||||| | | ||| | || | || | || || || | || | ||||| Sbjct 1403504 AAGATGCTTGCTACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATT 1403563 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAA 364436 | ||||| | |||||| || | || || | | || || || ||| || Sbjct 1403564 TGAACAAGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGC-----AA 1403618 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 |||||||| || || |||||||||||||| || || |||||||| | || | || Sbjct 1403619 CATGCGTCACCGACCCATTGGTCTTGGTGTTCAAGGTCTCGCTGATGCCTTCCTTGCCCT 1403678 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | ||| | ||||| || || || ||||||| || || ||| | ||||| || || || Sbjct 1403679 CCGCATGCCCTTTGAGTCTCCCGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCAT 1403738 Query 364557 GTATTTTGCCGCAATGACTGCTTC-GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615 || ||| || | || | || ||| | | | ||| | || || ||||| | Sbjct 1403739 CTACCATGCTGCCCTTACCACGTCTGTGCAACTCGCCAAGGAGGAA-GGTCCCTACTCCA 1403797 Query 364616 CTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675 | | |||| |||||| || |||| | |||||||||| | |||||||||| || Sbjct 1403798 CCTTCAAGGGTTCCCCTGCCTCTGAGGGTATTCTCCAGTTTGACATGTGGAATGTCAAGC 1403857 Query 364676 CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCA 364735 | |||| | ||| | ||||| | || || | || |||| || |||| |||| Sbjct 1403858 CCTCTGATCTTTGGGATTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCA 1403917 Query 364736 AC--TC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACA 364792 || || |||||| || || ||||| || || ||| | ||||| || || |||| Sbjct 1403918 ACAGTCTGCTCGTT---GCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACA 1403974 Query 364793 ACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAAT 364852 |||||||||| || || | || ||| | || |||||| || ||| | || || | Sbjct 1403975 ACGAGTGCTTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGT 1404034 Query 364853 TTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACA 364912 | | ||| || || | || ||||||||||| |||| || || ||| || Sbjct 1404035 TCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGACATGGGTCTTTGGTCCGATG 1404094 Query 364913 GCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAG 364972 ||||||||| ||||| || | ||| |||||| | |||||||| || | || | Sbjct 1404095 CTATGAAGAACCGCATCATTGCTGATAACGGTTCTATCCAGAACATCCCCAACATCCCTG 1404154 Query 364973 AAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATA 365032 || | ||| || | ||||| || || ||||| ||||| |||| | | | | Sbjct 1404155 CCGAGATCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTGTGCAGA 1404214 Query 365033 TGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTC 365092 |||| || || || ||||| || || |||| ||||| | ||| | ||||| Sbjct 1404215 TGGCTGCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGG 1404274 Query 365093 AGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGA 365152 | || ||| | |||| | || |||||| ||| || ||||| |||||| |||| Sbjct 1404275 ACCCTACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGA 1404334 Query 365153 CAGG 365156 | || Sbjct 1404335 CTGG 1404338 Score = 102 bits (112), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACG-TTCATTCGCGGAACG 22493 || ||||| |||||||| | |||||| | |||| |||| ||| || || | || Sbjct 2197200 AAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAA-GAACTCTTCCTTTGCTCAGCG 2197142 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 |||| |||| ||||||| ||||| || || ||||| || || ||| | | ||||| Sbjct 2197141 TCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTT 2197082 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || || |||| | ||||| ||||| | ||||| || ||| | ||| || Sbjct 2197081 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCG 2197022 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||||||||||| || || ||||| ||| Sbjct 2197021 TGATGAGGGTCTTCACACTGACTTTGCCTGT 2196991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353165820332