Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3 138 2e-27
seq2 98.7 2e-15
>seq3
Length=7873615
Score = 138 bits (152), Expect = 2e-27
Identities = 403/615 (66%), Gaps = 17/615 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||| ||||| |||
Sbjct 2196725 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTG 2196784
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| ||| | ||| || || |||| || ||| || || || || || |
Sbjct 2196785 GACTTGTACACCTTCTCGTTGCCGAGAGCCACGAGGAGGCGATCGGCGACGAATTCGATG 2196844
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || | ||||||||||| | || | |||||| | ||||| || |
Sbjct 2196845 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGAGCACAAGGGAGAGCCTCGGTGAGG 2196904
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798
|| |||| || | | ||| || || | ||| ||| ||| ||| | | | |
Sbjct 2196905 AACTCCTGCTCAATAGAAACGGCATCGGTGATAATGTCCTGGATCATCTGTTTGCTGGCA 2196964
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | || || | |||| ||||| | |||| | ||| |||||||| ||
Sbjct 2196965 CGTC----CCTTGAGGTGAGAGTGGAGGAGACAGGCAAAGTCAGTGTGAAGACCCTCATC 2197020
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| |||| ||||||||| | | ||| |||||||| | ||||| ||| |||||||
Sbjct 2197021 ACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 2197080
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | ||||| || ||| | | |||||| || | | ||||||||
Sbjct 2197081 GAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAG 2197140
Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032
|||| |||||| || ||||||||| || | | || ||||| | |||||
Sbjct 2197141 ACGCTGAGCAAAGGAAGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAATCCGCCTT 2197197
Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092
||||| | || || || || | || | ||||| | | |||| |||| |||
Sbjct 2197198 CTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACGCTGGGCAGGGTC 2197257
Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152
|| |||| | ||| | ||||| ||||| | || || |||||| || | | ||
Sbjct 2197258 CTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGAT 2197317
Query 252153 CTGGTAAGCATAGAA 252167
|||| || |||||||
Sbjct 2197318 CTGGAAACCATAGAA 2197332
>seq2
Length=8944178
Score = 98.7 bits (108), Expect = 2e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235
||||| ||||||||||| || || || || || ||||| |||| |||||||| |||
Sbjct 1741837 ATTGGCCCCAATGGTGCCGGAAAATCGACACTTATCAAGCTCCTTACTGGCGAAACCATT 1741896
Query 280236 GCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295
||| || ||| |||||| |||||| |||| || | |||| || ||||||
Sbjct 1741897 CCCAGCACTGGAAAAGTTGAGAAGCACCCCAACTTGCGTATTGGTTACATCAAGCAGCAC 1741956
Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355
||| | | ||| | |||| ||| |||| | ||| |||||||| ||| | ||||||||
Sbjct 1741957 GCTCTGGAGCACGTTGAGATGCACTTGGAGAAGACCCCTAACCAGTACCTCCAGTGGCGT 1742016
Query 280356 TA 280357
||
Sbjct 1742017 TA 1742018
Score = 95.1 bits (104), Expect = 2e-14
Identities = 158/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 7266059 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 7266118
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| |||||||||| | || || ||||| |||||||| || |
Sbjct 7266119 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGTGGTCCCAACGGTTCC 7266178
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 7266179 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 7266237
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
||||| | ||| || | || ||||||||| | |||||| ||
Sbjct 7266238 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 7266283
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/137 (76%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| |||||||| || || || ||| ||||| |||| | | ||
Sbjct 7267461 CTCACTCTCGCATGCGCGGTCTGTCCGGCGGTCAGCGTGTCAAGACTGTCCTGGCCGCTT 7267520
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | || || | |||||||| |||||||||||||||||||| |||||
Sbjct 7267521 GCTCT-TGGCAGCGACCCCATCTTATCGTTCTTGACGAGCCTACCAACTATCTTGACCGT 7267579
Query 280821 GAGAGCCTGGGCGCTCT 280837
|| ||| || |||||
Sbjct 7267580 GACTCCCTCGGTGCTCT 7267596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836457601866
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |