Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 seq2 150 3e-31 seq1 134 3e-26 >seq3 Length=7873615 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || |||||||| || |||||||| || ||| Sbjct 6200824 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6200883 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 6200884 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6200943 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 6200944 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 6201003 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | |||||| || || |||||||||||||||||||| |||||||| |||| Sbjct 6201004 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATGC 6201055 Score = 105 bits (116), Expect = 1e-17 Identities = 547/859 (64%), Gaps = 19/859 (2%) Strand=Plus/Plus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || || ||||||||||| || | || || |||||||||||||| |||||| | ||| Sbjct 2196692 ACACCGGCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGG 2196751 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || ||| |||||||||||| || ||||| || || ||| || ||||| Sbjct 2196752 GAGATGTTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGA 2196811 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 || || | ||| || || ||||| ||||||||||| |||| |||| ||||||||| Sbjct 2196812 GCCACGAGGAGGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATG 2196871 Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178 || | || || |||| || ||| | ||| |||| || | | || || || Sbjct 2196872 CCGAGCAGAGCACAAGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCG 2196931 Query 10179 TCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGT-TCTCGAGCTTCGAATACAGGAG 10237 || ||| || | || | | || || || ||| | || | ||||| Sbjct 2196932 GTGATAATGTCCTGGATCATCT-GTTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAG 2196990 Query 10238 CTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAG 10297 |||| | ||| || ||||| || || |||| ||||||||| || | ||| Sbjct 2196991 ACAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAG 2197050 Query 10298 ACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGAGAACA 10356 ||| |||||||| || || || |||||||| |||| ||| || | ||| ||| | Sbjct 2197051 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGA 2197109 Query 10357 GAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTC--GCGCG 10413 | |||||| ||| | | || || || |||| || |||| || | || | | Sbjct 2197110 AGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCT 2197169 Query 10414 AAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCT 10473 | || |||||| | |||||||||| | | ||| || || || | || | Sbjct 2197170 GGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2197229 Query 10474 CGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATT 10533 |||||| | |||||| || ||||| || | ||| | ||| ||||||||| Sbjct 2197230 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2197289 Query 10534 GCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCGAGGGG 10592 ||| ||||| | |||| | |||| || | ||||| ||| || ||| |||| Sbjct 2197290 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAT-CGAGCCTCGGGG 2197348 Query 10593 TCCGTGACTTCCTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCCATCGCTGCC 10651 | ||| | | | || | | | | | |||||||| | || ||||| ||| | | Sbjct 2197349 ATCTGGACCT-CGCCGCTGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGC 2197407 Query 10652 TGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATC----ATCGTTCAGTTTTT 10707 || ||||| | || ||||| |||||||| |||| || || | ||| || Sbjct 2197408 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTT 2197467 Query 10708 CACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAA 10767 |||||| | ||||| | ||| | || |||||| | |||||||| | ||| Sbjct 2197468 ----CCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCT 2197523 Query 10768 CGGCCTTCTTGTACATCTG 10786 | |||||||||||||| || Sbjct 2197524 CTGCCTTCTTGTACATTTG 2197542 >seq2 Length=8944178 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||| ||| || || || || || |||||||| || ||||| Sbjct 2591333 TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 2591392 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| |||||||| || | || || ||||| || || Sbjct 2591393 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 2591452 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || |||||||| |||||||| | ||||||| ||||| ||||| | ||| || || Sbjct 2591453 GATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAAC 2591512 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || || | ||||||||||| Sbjct 2591513 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 2591550 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || || ||||| || || ||||| || || ||| Sbjct 2591616 CCACCACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAG 2591675 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | || || ||||| || || Sbjct 2591676 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2591735 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | |||||| ||||| ||||| | ||| || || Sbjct 2591736 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACC 2591795 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 2591796 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2591842 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || || ||||| || ||||| || || || ||| Sbjct 2591844 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAG 2591903 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | || || || || || || Sbjct 2591904 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGG 2591963 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| ||||| || || | ||| || || Sbjct 2591964 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACC 2592023 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || | |||||||||||| |||||||| Sbjct 2592024 TCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2592070 Score = 96.9 bits (106), Expect = 6e-15 Identities = 429/667 (64%), Gaps = 33/667 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| || ||||| || || || |||||| Sbjct 7267068 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 7267009 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 7267008 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 7266949 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| ||||| || |||| |||||| ||||| ||||| || || Sbjct 7266948 ATAAGCTCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCGGCACCGTTGGGACCGATA 7266889 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA-----GATCTCAG 225215 ||| |||| || || || | ||| || | || ||||| | | || Sbjct 7266888 ACGGCAATACGAGAGCCCAGAGAGCACTGGAAGGAGATGTCGCTGATCTGGGGCTTGGAG 7266829 Query 225216 GG-CCAGTTTGGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGGTCC 225268 | |||| |||| |||| || | |||| || ||||| | || Sbjct 7266828 GTACCAG---GGTACTGGAAGGACATGTGGGTGGCACGGAGA------ATGGCCTTGGCC 7266778 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | |||||| ||||| |||||||||||||| ||| | || | | || Sbjct 7266777 TTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCGGACTCA 7266718 Query 225329 TTCAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387 || ||||||||||| || |||| || || |||||||||| |||||| || Sbjct 7266717 CCAAGCTCGTAGTAAGACTTGGCGGAGGGGTTGC-GGGCGACGAAAGCAGCCAGGTTACC 7266659 Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGT 225446 || | ||||||||| || |||||| ||||| || ||| | ||| || || Sbjct 7266658 CTTGTAACGCTTGAGCTTGA--ATC-GCTCGTAGTGAACGATGTGCTG-GCAGACGTTGT 7266603 Query 225447 CAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGG 225505 | ||||| || |||||||| ||||| || ||||| | || | || | ||||||| Sbjct 7266602 CGAGGAAACCGGAGTCGTGAGACACCATAATGGAAGTGCAAG--CG--GAGTTCTTGAGG 7266547 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | | |||||| ||||| | || |||| ||||| ||||| ||||| || | | Sbjct 7266546 TACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGCAAC 7266487 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || || || | | | || || || || |||| |||||||| ||||| || || Sbjct 7266486 AGAATATCGGGAGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCAACCACCA 7266427 Query 225626 GACAGGG 225632 || |||| Sbjct 7266426 GAGAGGG 7266420 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/208 (70%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||| ||||||||| |||||| | |||| ||| |||||| || | | | Sbjct 1742018 TAACGCCACTGGAGGTACTGGTTAGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCCAGA 1741959 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC------AGAGCCC 225091 || ||||| | ||| | || |||| |||||| |||||| || || || Sbjct 1741958 GCGTGCTGCTTGATGTAACCAATACGCAAGTTGGGGTGCTTCTCAACTTTTCCAGTGCTG 1741899 Query 225092 CGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTG 225151 || | |||| ||||| || |||| |||||| || || | || || ||||||||| Sbjct 1741898 GGAAT-GGTT-----TCGCCAGTAAGGAGCTTGATAAGTGTCGATTTTCCGGCACCATTG 1741845 Query 225152 GGGCCAATCACGCCAATCCGGGATGACA 225179 |||||||| | | ||| || ||||||| Sbjct 1741844 GGGCCAATAATGGCAACACGAGATGACA 1741817 >seq1 Length=11834931 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 6501023 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6500964 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 6500963 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6500904 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 6500903 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6500845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622100472720