Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq3 170 4e-37
seq2 150 3e-31
seq1 134 3e-26
>seq3
Length=7873615
Score = 170 bits (188), Expect = 4e-37
Identities = 177/232 (76%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | |||||||| || |||||||| || |||||||| || |||
Sbjct 6200824 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6200883
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || |||| || ||||| || ||
Sbjct 6200884 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6200943
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| || |||||||| | || || ||
Sbjct 6200944 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 6201003
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466
|| | |||||| || || |||||||||||||||||||| |||||||| ||||
Sbjct 6201004 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATGC 6201055
Score = 105 bits (116), Expect = 1e-17
Identities = 547/859 (64%), Gaps = 19/859 (2%)
Strand=Plus/Plus
Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998
|| || ||||||||||| || | || || |||||||||||||| |||||| | |||
Sbjct 2196692 ACACCGGCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGG 2196751
Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058
|| ||| |||||||||||| || ||||| || || ||| || |||||
Sbjct 2196752 GAGATGTTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGA 2196811
Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118
|| || | ||| || || ||||| ||||||||||| |||| |||| |||||||||
Sbjct 2196812 GCCACGAGGAGGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATG 2196871
Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178
|| | || || |||| || ||| | ||| |||| || | | || || ||
Sbjct 2196872 CCGAGCAGAGCACAAGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCG 2196931
Query 10179 TCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGT-TCTCGAGCTTCGAATACAGGAG 10237
|| ||| || | || | | || || || ||| | || | |||||
Sbjct 2196932 GTGATAATGTCCTGGATCATCT-GTTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAG 2196990
Query 10238 CTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAG 10297
|||| | ||| || ||||| || || |||| ||||||||| || | |||
Sbjct 2196991 ACAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAG 2197050
Query 10298 ACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGAGAACA 10356
||| |||||||| || || || |||||||| |||| ||| || | ||| ||| |
Sbjct 2197051 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGA 2197109
Query 10357 GAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTC--GCGCG 10413
| |||||| ||| | | || || || |||| || |||| || | || | |
Sbjct 2197110 AGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCT 2197169
Query 10414 AAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCT 10473
| || |||||| | |||||||||| | | ||| || || || | || |
Sbjct 2197170 GGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2197229
Query 10474 CGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATT 10533
|||||| | |||||| || ||||| || | ||| | ||| |||||||||
Sbjct 2197230 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2197289
Query 10534 GCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCGAGGGG 10592
||| ||||| | |||| | |||| || | ||||| ||| || ||| ||||
Sbjct 2197290 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAT-CGAGCCTCGGGG 2197348
Query 10593 TCCGTGACTTCCTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCCATCGCTGCC 10651
| ||| | | | || | | | | | |||||||| | || ||||| ||| | |
Sbjct 2197349 ATCTGGACCT-CGCCGCTGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGC 2197407
Query 10652 TGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATC----ATCGTTCAGTTTTT 10707
|| ||||| | || ||||| |||||||| |||| || || | ||| ||
Sbjct 2197408 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTT 2197467
Query 10708 CACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAA 10767
|||||| | ||||| | ||| | || |||||| | |||||||| | |||
Sbjct 2197468 ----CCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCT 2197523
Query 10768 CGGCCTTCTTGTACATCTG 10786
| |||||||||||||| ||
Sbjct 2197524 CTGCCTTCTTGTACATTTG 2197542
>seq2
Length=8944178
Score = 150 bits (166), Expect = 3e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || ||||| || | |||| ||| || || || || || |||||||| || |||||
Sbjct 2591333 TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 2591392
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | || || || | |||||| |||||||| || | || || ||||| || ||
Sbjct 2591393 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 2591452
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|| || |||||||| |||||||| | ||||||| ||||| ||||| | ||| || ||
Sbjct 2591453 GATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAAC 2591512
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | ||||||||| || || || | |||||||||||
Sbjct 2591513 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 2591550
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | || || || ||||| || || ||||| || || |||
Sbjct 2591616 CCACCACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAG 2591675
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || | || || ||||| || ||
Sbjct 2591676 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2591735
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || ||||| | |||||| ||||| ||||| | ||| || ||
Sbjct 2591736 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACC 2591795
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| || |||||
Sbjct 2591796 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2591842
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | || || || ||||| || ||||| || || || |||
Sbjct 2591844 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAG 2591903
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || | || || || || || ||
Sbjct 2591904 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGG 2591963
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | |||||| ||||| || || | ||| || ||
Sbjct 2591964 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACC 2592023
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| || || || || || | |||||||||||| ||||||||
Sbjct 2592024 TCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2592070
Score = 96.9 bits (106), Expect = 6e-15
Identities = 429/667 (64%), Gaps = 33/667 (5%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | || ||| |||| || ||||| || || || ||||||
Sbjct 7267068 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 7267009
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 7267008 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 7266949
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| || |||||||| ||||| || |||| |||||| ||||| ||||| || ||
Sbjct 7266948 ATAAGCTCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCGGCACCGTTGGGACCGATA 7266889
Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA-----GATCTCAG 225215
||| |||| || || || | ||| || | || ||||| | | ||
Sbjct 7266888 ACGGCAATACGAGAGCCCAGAGAGCACTGGAAGGAGATGTCGCTGATCTGGGGCTTGGAG 7266829
Query 225216 GG-CCAGTTTGGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGGTCC 225268
| |||| |||| |||| || | |||| || ||||| | ||
Sbjct 7266828 GTACCAG---GGTACTGGAAGGACATGTGGGTGGCACGGAGA------ATGGCCTTGGCC 7266778
Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328
|||| | | |||||| ||||| |||||||||||||| ||| | || | | ||
Sbjct 7266777 TTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCGGACTCA 7266718
Query 225329 TTCAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387
|| ||||||||||| || |||| || || |||||||||| |||||| ||
Sbjct 7266717 CCAAGCTCGTAGTAAGACTTGGCGGAGGGGTTGC-GGGCGACGAAAGCAGCCAGGTTACC 7266659
Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGT 225446
|| | ||||||||| || |||||| ||||| || ||| | ||| || ||
Sbjct 7266658 CTTGTAACGCTTGAGCTTGA--ATC-GCTCGTAGTGAACGATGTGCTG-GCAGACGTTGT 7266603
Query 225447 CAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGG 225505
| ||||| || |||||||| ||||| || ||||| | || | || | |||||||
Sbjct 7266602 CGAGGAAACCGGAGTCGTGAGACACCATAATGGAAGTGCAAG--CG--GAGTTCTTGAGG 7266547
Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565
| | |||||| ||||| | || |||| ||||| ||||| ||||| || | |
Sbjct 7266546 TACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGCAAC 7266487
Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625
|| || || | | | || || || || |||| |||||||| ||||| || ||
Sbjct 7266486 AGAATATCGGGAGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCAACCACCA 7266427
Query 225626 GACAGGG 225632
|| ||||
Sbjct 7266426 GAGAGGG 7266420
Score = 93.3 bits (102), Expect = 8e-14
Identities = 146/208 (70%), Gaps = 12/208 (6%)
Strand=Plus/Minus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||||| ||||||||| |||||| | |||| ||| |||||| || | | |
Sbjct 1742018 TAACGCCACTGGAGGTACTGGTTAGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCCAGA 1741959
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC------AGAGCCC 225091
|| ||||| | ||| | || |||| |||||| |||||| || || ||
Sbjct 1741958 GCGTGCTGCTTGATGTAACCAATACGCAAGTTGGGGTGCTTCTCAACTTTTCCAGTGCTG 1741899
Query 225092 CGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTG 225151
|| | |||| ||||| || |||| |||||| || || | || || |||||||||
Sbjct 1741898 GGAAT-GGTT-----TCGCCAGTAAGGAGCTTGATAAGTGTCGATTTTCCGGCACCATTG 1741845
Query 225152 GGGCCAATCACGCCAATCCGGGATGACA 225179
|||||||| | | ||| || |||||||
Sbjct 1741844 GGGCCAATAATGGCAACACGAGATGACA 1741817
>seq1
Length=11834931
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | ||||| || | |||||| |||||||| ||
Sbjct 6501023 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6500964
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || || || || || ||||| |||||||| || ||||| | |||||| |||
Sbjct 6500963 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6500904
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||| |||||||| |||||
Sbjct 6500903 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6500845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622100472720
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