Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq3 318 1e-81
>seq3
Length=7873615
Score = 318 bits (352), Expect = 1e-81
Identities = 596/860 (69%), Gaps = 28/860 (3%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || |||| |||||| || |||||||| || ||
Sbjct 2197548 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2197489
Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAA 42415
||||||| || |||| | || || ||| | |||| | | ||| ||
Sbjct 2197488 TCCAAGGATCTCCACGACTGGAACA-ACCGTTTGACTTCGGACGAGCAATACTTCATCTC 2197430
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|||| || || |||||||| ||||| |||||||| |||||||||||||| | |
Sbjct 2197429 CCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAGCG 2197370
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||| ||||| ||| | ||||| || |||||||| || |||||||| ||
Sbjct 2197369 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGAT 2197310
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595
|||||| | ||||| || ||| || || || | || |||||| ||| || |
Sbjct 2197309 GGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTGC 2197250
Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655
| |||||| || ||||| ||| | || || || || |||||| |||||||||||
Sbjct 2197249 CCAGCGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGA 2197190
Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714
||||| || |||||| || | | || | | | || | || | || || || |
Sbjct 2197189 TTGGGCCATCCGATGGATCCAG-GACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTGCTT 2197131
Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774
|| | ||||| ||||| ||||||||| || ||||| || ||||||||||||||||||
Sbjct 2197130 TTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGA 2197071
Query 42775 AGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833
|| || || ||||| || || | ||| || ||||| ||||| | || |||||
Sbjct 2197070 AGCGTGGCCTC-ATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGGGT 2197012
Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAA 42892
|| || | ||||||||||| ||||| ||| |||||| ||| || ||| | ||
Sbjct 2197011 CTTCACACTGACTTTGCCTGTCTCCTCCACTC---TCACCTCAAGGGACGTGCCAGC-AA 2196956
Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952
|| | ||| || ||| ||||| || ||||| || ||| ||||||||||||| |
Sbjct 2196955 ACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTCCTCACCGA 2196896
Query 42953 GTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011
| | || ||| ||| | ||| ||||||||||| | |||||||| |||||||| | |
Sbjct 2196895 GGCTCT-CCCTTGTGCTCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAAT 2196837
Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACGC 43065
|||||||| ||| ||| || ||| |||| || || | ||||| |
Sbjct 2196836 TCGTCGCCG---ATCGCCT---CCTCGTGGCTCTCGGCAACGAGAAGGTGTACAAGTCCA 2196783
Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125
| ||| |||||||| |||||||||||||| | | |||||||||||||| |||||||
Sbjct 2196782 CCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGA 2196723
Query 43126 AGCGCGTCGCCGACTACCAG 43145
||||||| || |||||||||
Sbjct 2196722 AGCGCGTTGCTGACTACCAG 2196703
Score = 300 bits (332), Expect = 3e-76
Identities = 889/1363 (65%), Gaps = 51/1363 (4%)
Strand=Plus/Minus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | || || ||||| ||||||| |||| | || ||
Sbjct 1404048 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 1403989
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||| | || ||| ||||||| || ||||||| || || || || ||||| || | ||
Sbjct 1403988 CTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAAC 1403929
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269
||||||||||| | | ||||| ||| || || ||| | ||| |||||
Sbjct 1403928 GAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAATCCCA 1403869
Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
| | ||||| | | | || ||||||||||||||| || | ||||
Sbjct 1403868 AAGATC--AGAGGGCTTGACATT-------CCACATGTCAAACTGGAGAATACCCTCAGA 1403818
Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388
| | ||| |||| | |||| | ||||||||| || || ||| || | |||| |
Sbjct 1403817 GGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGGCGAGTTGCACAGACGT 1403758
Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448
|| ||||| || | |||||||||||||||||| |||||||| || || |||| |
Sbjct 1403757 GGTA-AGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCCTCGG 1403699
Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508
| ||||| |||| | | |||| | || || || || || || || | |
Sbjct 1403698 GAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGACCTTGAACACCAAGAC 1403639
Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568
| ||||||| ||| ||| ||||| | || || | || ||||| |||| |||
Sbjct 1403638 CAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGTGGTTGACGT 1403579
Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628
|||| | |||||| | |||||| | | | ||| ||| |||| || ||||
Sbjct 1403578 CGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCTTCTTGAAGT 1403519
Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC---GAC-- 244683
|||| | | | ||| || | || ||| || |||||| |||
Sbjct 1403518 CGTA---GCAAGCATCTTCATAGTTGATGA--------AA------GAGGGCAGAGACAA 1403476
Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743
| ||| |||||||| || || ||||| || | | | ||| | | ||||| |||||
Sbjct 1403475 GGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCA 1403416
Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803
||||| || |||||| || |||| || || ||| |||| |||||| ||
Sbjct 1403415 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1403356
Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863
||||||||||||||| || || ||||| |||||| | || | | || ||| ||
Sbjct 1403355 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1403296
Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923
| | |||||||| | | ||||| |||| |||||| |||||| |||||| ||
Sbjct 1403295 CTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 1403236
Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGA 244981
||| || ||| || || || | || || ||||| || | ||||||||||||
Sbjct 1403235 CTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTG--GGGCACATGAGA 1403178
Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041
|||| |||||| || ||| | || |||||| || || |||||||| || ||| ||
Sbjct 1403177 GTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCAGG 1403118
Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101
|| ||||| | | | ||| ||| || |||||| | || || | || ||
Sbjct 1403117 AACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCG 1403058
Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161
||||||||| ||||||| ||||| | ||||| |||| ||| || || |||||||| ||
Sbjct 1403057 AAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCA 1402998
Query 245162 CCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217
|||||||| | | | ||||| |||||| | ||||| | || || || ||
Sbjct 1402997 CCCTGGTCGA----CGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACC 1402942
Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGAT 245274
||| || || ||||| || |||||| | ||| || | | || ||| | | |
Sbjct 1402941 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTT 1402882
Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334
| ||| | || || || |||||| || | ||| || |||||| ||| ||
Sbjct 1402881 ---TAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTA 1402825
Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394
|| || || ||||||||| |||||| | | || ||||| || || ||||| ||||
Sbjct 1402824 GATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTG 1402765
Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
||| | | | |||||||| ||||||||| || || || |||
Sbjct 1402764 TGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAG 1402722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338893089760
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