Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 1e-21
seq1 118 1e-21
seq2 98.7 9e-16
>seq3
Length=7873615
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| |||| |
Sbjct 6200824 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6200883
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||| | ||||||||| || || ||
Sbjct 6200884 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6200943
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | |||||| | | ||| ||
Sbjct 6200944 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCAC 6201002
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | ||| || || || || || || || ||||||||||||
Sbjct 6201003 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 6201051
>seq1
Length=11834931
Score = 118 bits (130), Expect = 1e-21
Identities = 122/159 (77%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || || ||| ||||||||||||||||||| || || |||||||||||
Sbjct 6500991 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 6500932
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| |||||||| | |||||| |||| ||| |
Sbjct 6500931 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 6500872
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116
|| ||||| ||||| || || || ||| ||| |||||
Sbjct 6500871 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 6500835
>seq2
Length=8944178
Score = 98.7 bits (108), Expect = 9e-16
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || |||||||| || | || || ||| || ||||| || ||
Sbjct 2591874 GTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 2591933
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||||||||||||||| || || || |||||||||||| || || ||||
Sbjct 2591934 GCGAAAATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 2591993
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| || || | ||| || |||| ||| | || |||||||||| ||
Sbjct 2591994 ACATTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTC 2592053
Query 127097 TTTACAAAAATCTGCATGG 127115
|| || || ||||||||||
Sbjct 2592054 TTGACGAAGATCTGCATGG 2592072
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| || | || || || || ||||| || ||
Sbjct 2591646 GTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 2591705
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||||||||||||| || ||||| ||||||||||| ||| ||| || ||||
Sbjct 2591706 GCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGACTTG 2591765
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | |||||| || | ||| | || ||||| || || ||
Sbjct 2591766 ACATTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTC 2591825
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || || |||||
Sbjct 2591826 TTGACGAAGATTTGCAT 2591842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500645462240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |