Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-24 >seq3 Length=7873615 Score = 127 bits (140), Expect = 3e-24 Identities = 1066/1704 (63%), Gaps = 57/1704 (3%) Strand=Plus/Minus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 |||| || |||||||||||||| || |||||||| || |||||||| || | ||| Sbjct 1404362 GCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGC 1404303 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668 || || | |||| | || || | |||| | ||| | | || || ||| Sbjct 1404302 ATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGA 1404243 Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCC 115725 || |||||| || || || || ||||| | |||| ||| || || ||| Sbjct 1404242 TCAATGAAGGCACCACGGTCAGCAGCCATCTG---CACAACCTGTCGCTGAGAAATCTCC 1404186 Query 115726 CACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAG 115785 |||||||| |||| || ||| || || | ||||| | ||| || |||||||| Sbjct 1404185 CACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAA 1404126 Query 115786 CC---ACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTG 115842 || | | || ||| || | | ||||||| | | ||||| ||||| || | Sbjct 1404125 CCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACA 1404069 Query 115843 AGATCCTCCA----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCT 115898 ||||||| | | ||| | |||||||| ||||| || || ||| || | Sbjct 1404068 AGATCCTTGAGAAGCCAGGGG----TTGACAACCTGGAACTCGCCAGCAAGGACTCGGCG 1404013 Query 115899 CAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGT 115958 | |||||||||| ||||| |||||||||||||| ||||| || | || || | || Sbjct 1404012 TTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGT 1403953 Query 115959 GGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCG 116018 ||| || ||||| || || | ||| || |||||||||| ||| | | | Sbjct 1403952 ACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATC 1403893 Query 116019 TTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || ||||| ||||| | | || | || | || | | |||||| |||||| Sbjct 1403892 CTCTCGGAGGGGTTCCCAATCCCAAAGATCAG--AGGGCTTGACATTCCACATGTCAAAC 1403835 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 ||||| ||||| | || || || || |||| || || || || || || ||| Sbjct 1403834 TGGAGAATACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTG 1403775 Query 116137 GCCAATT-CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 || | || | || || ||||| || || || || ||||| || || | || Sbjct 1403774 GCGAGTTGCACAG-ACGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTT 1403716 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || | |||||| || ||||| | | ||| || || |||| ||||| Sbjct 1403715 CAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAG 1403656 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 |||||| ||||| || ||||| || || || | ||| || || ||||| | || Sbjct 1403655 ACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGAC 1403596 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || || ||||| | | | || | ||| | ||||| | |||| || Sbjct 1403595 AGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTC 1403536 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGC 116432 || ||||| | | | || | || || |||||| |||| | || || | Sbjct 1403535 GTGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATGAAAGAGGGCAGAGA 1403479 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 | || || || || || |||| | |||||| | ||| || || || || || Sbjct 1403478 CAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGT 1403419 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 |||| || || || ||||| || | ||||||||| || ||| || || Sbjct 1403418 GCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTG 1403359 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 ||||||||||||||| | || | || ||||| || |||| || ||||| || | ||| Sbjct 1403358 ATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCA 1403299 Query 116613 TA-CATCGGCGGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 | | || | | | || | | | ||| | ||||| |||||||||| ||| Sbjct 1403298 AAGCTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCTCGTACTTTTCGTAC 1403241 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGA 116728 || |||||||| || ||| || ||| || | || || || || || | || || | Sbjct 1403240 AGAGCCTCAAATTCGTCA-CCGTAGCAGTCAGCAAGACCAGG-GCATTCGTTGGGGCACA 1403183 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 ||||| ||||| || | ||| || ||||||||||| || || |||||||| || | Sbjct 1403182 TGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1403123 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 || ||| || || ||| ||| | || || | || || || || | || | | Sbjct 1403122 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1403063 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGC 116902 | || | || || |||||||| || || ||||| | |||| | || | |||| Sbjct 1403062 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTG- 1403004 Query 116903 GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 |||| |||||| || || | || || ||| || || || ||||| |||| | Sbjct 1403003 --TTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAA 1402946 Query 116963 TACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTG 117020 |||| | || ||||| || || ||| || ||| | |||| | || ||| Sbjct 1402945 TACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCC--AGTGGCACGGATTCGGTG 1402888 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 | || | |||||||| || ||| ||| || || || || | |||| | | Sbjct 1402887 GGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATC 1402828 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 |||||| ||||| || ||| |||| | | | |||||||| || | || || Sbjct 1402827 GTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGG 1402768 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGAC 117198 | ||| ||||| |||||||| | || || |||| || ||| | | |||| ||| Sbjct 1402767 CTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGA--AGAACTTGCTTGAC 1402710 Query 117199 ATCTTATCGTAGGTCTCCAAGACA 117222 || | ||| |||||||||||| Sbjct 1402709 ATGAGGTTGTATGTCTCCAAGACA 1402686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507000610160