Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 172 5e-38 seq2 109 5e-19 seq1 102 8e-17 >seq3 Length=7873615 Score = 172 bits (190), Expect = 5e-38 Identities = 541/826 (65%), Gaps = 19/826 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || || |||||| Sbjct 2196722 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTG 2196781 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||||| || | ||||| || | ||||| ||||| Sbjct 2196782 GTGGACTTGTACACCTTCTCGTTGCCGAG-AG--CCACGAGGAGGCGATCGGCGACGAAT 2196838 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTC 132800 |||||||| ||| |||| | | | || | || |||||| |||| || || || || Sbjct 2196839 TCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGA-GCACAAGGGAGAGCCTC 2196897 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 |||||| || ||||| || | || || ||||||| || ||| | | Sbjct 2196898 GGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGTCCTGGATCATCTGTTT 2196957 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| | ||| | | || | | | || |||||||| || | ||||| Sbjct 2196958 GCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGACAGGCAAAGTCAGTGTGAAGACCCTC 2197017 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | |||||||| |||||| || ||| || ||||||||||| || || ||||| Sbjct 2197018 ATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAG 2197077 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| || || || ||||||| ||||| ||||| || ||||| || Sbjct 2197078 CCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAAC 2197137 Query 133041 CAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 || |||| | || | | ||||| | |||| ||||| || | ||||| || ||| Sbjct 2197138 AAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGG--ATCCATCGGATGGCCCAATCCGCC 2197195 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAG 133158 || | | || ||| || || || || | |||||| || | | | | | || || Sbjct 2197196 TTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAG--GTATGTACGCTGGGCAG 2197253 Query 133159 GAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | | |||||| ||||||||| || || |||| ||||| | ||||||||| Sbjct 2197254 GGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCA 2197313 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 ||| || || || || ||||| || |||||| | ||| || || ||| |||| Sbjct 2197314 TGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAATCGCT 2197373 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 | || || || || ||||||||||||||| ||| ||||| || || || | ||| || Sbjct 2197374 CAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAATGTGGGAGA 2197433 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||| | |||||| |||| || | ||||||| | |||||||| || | Sbjct 2197434 TGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGAT 2197493 Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | |||||| | ||||| || || ||||| || || |||||||| Sbjct 2197494 CGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACAT 2197539 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 6201050 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 6200991 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 6200990 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 6200932 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 6200931 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6200872 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || ||||| || || Sbjct 6200871 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCG 6200836 >seq2 Length=8944178 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| | || |||||| | || Sbjct 2591842 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 2591783 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| || || ||||| || || | ||||| Sbjct 2591782 GACACTATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2591723 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 2591722 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCAGACTACAAC 2591663 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || ||| | || || || Sbjct 2591662 ATTCAGAAGGAGTCAACCCTTCATCTCGTCCTCCG 2591628 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || | || ||||| ||||||||| | || || ||| | |||||| | Sbjct 2591550 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGACACTATCG 2591491 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || || | ||||| ||||| || || | ||||| ||||| | Sbjct 2591490 ACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGATTG 2591432 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| ||||| || |||| || |||||| ||||||||||||||| ||| Sbjct 2591431 ATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAG 2591372 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || || |||| || ||| Sbjct 2591371 GAATCAACCCTTCACCTGGTCCTTCGT 2591345 >seq1 Length=11834931 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| | | |||| | | Sbjct 6500845 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 6500904 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | || || ||||| | Sbjct 6500905 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 6500964 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 6500965 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 6501024 Query 38433 G 38433 | Sbjct 6501025 G 6501025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172637443840