Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 seq4 96.9 4e-15 >seq3 Length=7873615 Score = 187 bits (206), Expect = 3e-42 Identities = 569/868 (66%), Gaps = 21/868 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| ||||||| ||||| | || ||| || || |||||||| ||| Sbjct 1402629 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGT 1402688 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| || ||||| | | |||| || || | || || | || Sbjct 1402689 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTGTT 1402748 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| ||| || || | || || |||||| ||| | |||||||| Sbjct 1402749 CAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAGGA 1402808 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || |||| || |||| || |||| |||||| || || ||| |||||| Sbjct 1402809 CAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGG 1402868 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||| || | || ||| || | |||| ||| || ||||| || Sbjct 1402869 TGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACCAA 1402928 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 |||| || | |||||| |||| ||||| || || || ||| ||| || || || || Sbjct 1402929 TGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGT 1402988 Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 112024 |||| | ||| | |||| || || |||| |||| |||||||||||||| Sbjct 1402989 CGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCA 1403045 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082 ||| || || | ||||||||||| | || ||||| || | ||||||| |||| Sbjct 1403046 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGC 1403105 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 | || || || ||| ||||| ||||| || ||||| ||||||||| | || ||| | Sbjct 1403106 T--CGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGG 1403163 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 | ||| | ||| ||||| | || || || || || || ||||| | || | || Sbjct 1403164 AACGGCGAATGGACTCTCATGTGCCCCAACGAATGC-CCTGGTCTTGCTGACTGCTACGG 1403222 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 ||| || ||||| || || ||| |||||||||| ||| || || | | || | | Sbjct 1403223 TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCT 1403280 Query 112262 GCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || ||| | || | | ||| | || ||||| || | || || |||||||| | || Sbjct 1403281 ATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAACCC 1403339 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| || ||| || | ||||| || |||||||| | ||| || Sbjct 1403340 TTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAACCTTGGTACCAT 1403399 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | || |||||||| || || || ||| | |||| | | |||||| ||||| Sbjct 1403400 CCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGT 1403459 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCC 112466 || ||||| || || | |||| ||| Sbjct 1403460 TTGCAACCTTGCCTCCTTGTCTCTGCCC 1403487 Score = 134 bits (148), Expect = 2e-26 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGT 102170 |||| || || | |||||| ||||||||||| || ||| | | |||| | | | Sbjct 2197214 TTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAACTC-T 2197156 Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||||||| |||| || | || ||||| |||||||||||||||||| ||| || Sbjct 2197155 TCCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCC 2197096 Query 102231 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 || ||| | || | |||||||||||||| || |||||||| ||||| |||| ||||| Sbjct 2197095 TT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAA 2197037 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || |||||||| ||||| || ||| || ||||| Sbjct 2197036 CGAGCTCATTTCTCGTGATGAGGGTCTTCACACTGACTTTGC 2196995 >seq4 Length=8156551 Score = 96.9 bits (106), Expect = 4e-15 Identities = 220/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||||||||| || || |||| ||| || || || | ||| | | |||| || Sbjct 1494904 GGCATCAATCTCGTCGATAAAGATGATACAAGGAGCGTTCTTACGACCCTCGGCAAATAG 1494963 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 16182 ||| ||||| ||| | || ||||||||||||||||| || || | | | || || Sbjct 1494964 ATCTCGTACTCGCGAAGGTCCAACACCAACAAACATCTCGACGAATTCGGAGCCGCTCAC 1495023 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1495024 ACT-GAAGAAGGGCACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1495082 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 16299 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 1495083 TACCAGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1495142 Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTCTTCCAATTCA-TCTTTGGCGGCGTC 16357 ||||||| ||||| ||||| | ||||| ||| | ||| ||||| || | || Sbjct 1495143 ---TCTCAGGCTGCTTCAAGAAGCT-CACAAACTCCATAATCTCAGTCTTT-GCCTCCTC 1495197 Query 16358 AATCCCCTCAACATCGGTAAAC 16379 || || ||||||| | |||| Sbjct 1495198 AAGACCAGCAACATCCGCAAAC 1495219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742198258720