Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 >seq2 Length=8944178 Score = 113 bits (124), Expect = 5e-20 Identities = 268/398 (67%), Gaps = 13/398 (3%) Strand=Plus/Minus Query 159386 GAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGG 159445 |||| || || |||| || | || || || || || || ||||| || || | |||| Sbjct 1121165 GAAAGGTCTGCCTGATCCCTGTTTCTGCCCACGGTACCAACCCTGCCTCGGCTGCTATGG 1121106 Query 159446 CAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGA-TGGCAACATAGACATCAAAG 159502 | || ||||| || || ||||||||| || | | || ||| ||| | ||||| | | Sbjct 1121105 CTGGTATGAAGGTCGTCACTGTCAAGTGCGACGGCAAGACTGGTAACCTGGACATTGAGG 1121046 Query 159503 ATCTAGAG---AAGAAAGC-AATCATGAATACATTTGAACTGTCATGTATTATGATTACA 159558 |||| || ||| || || || | || || || | ||| ||| | || Sbjct 1121045 ATCTCAAGGCCAAGTGTGCCAAGCACGCTGAC----GAGCTTGCTGCTATCATGGTCACC 1120990 Query 159559 TATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCAT 159618 || || ||||| |||||| ||||| | | || | || | || | ||||||| Sbjct 1120989 TACCCCTCTACCTTTGGTGTCTTTGAGCCCGAGATTAAGCAAGTCTGCGATCTTGTTCAC 1120930 Query 159619 GAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCA 159678 ||| ||||||||| || || | || ||||| || | || || ||| | ||||| Sbjct 1120929 GAGCATGGTGGTCTCGTCTACATGGACGGTGCCAACATGAACGCCCAGATTGGTCTTTGC 1120870 Query 159679 AAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTAT 159737 || |||| ||| ||||| ||||| || ||||| ||| | || ||||| |||||||| Sbjct 1120869 TCTCCCGGTGA-TATCGGTGCTGATGTCTGCCATCTTAACCTCCACAAGACCTTCTGTAT 1120811 Query 159738 TCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG 159775 ||| || || ||||| || ||||| || |||||||||| Sbjct 1120810 TCCCCACGGTGGTGGTGGCCCTGGTGTCGGTCCTATTG 1120773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051008883360