Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 2e-13 >seq3 Length=7873615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 362/566 (64%), Gaps = 8/566 (1%) Strand=Plus/Minus Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 |||||||| ||||| ||||| ||||||| ||| |||| | |||| || | | |||| Sbjct 1403357 TCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAA 1403298 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA--TTTAGTATATA 48120 | || |||||| ||| | | | ||| || ||||| ||| ||| | | Sbjct 1403297 AGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGA 1403238 Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 | ||||||||| || || || | | | | ||||| ||||| || || ||||| | Sbjct 1403237 GC--CTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGA 1403180 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 | ||| || | | | | || | |||| || | ||| || ||||||||||| | Sbjct 1403179 GAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCA 1403120 Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300 || | || | || | | || || || || ||| || || ||||| || | Sbjct 1403119 GGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACT 1403060 Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360 | | | || || |||||||| || | || || || | |||| ||||| || |||| Sbjct 1403059 CGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 1403000 Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420 | || || || | || | ||||| ||||| | || | | ||| || |||||||| | Sbjct 1402999 CACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGT 1402940 Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGA 48478 | || |||||||||| || | || ||| ||| | || | || | || | Sbjct 1402939 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTTA 1402880 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || |||||||| ||||| || || || | ||||| || |||||||| || || Sbjct 1402879 A--GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 1402822 Query 48539 TCCTTCTATACTATCATCTATCATAT 48564 || || || || || || |||||| Sbjct 1402821 ACCATCAATGCTGTCCTCCTTCATAT 1402796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108617314640