Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 6e-13
>seq2
Length=8944178
Score = 89.7 bits (98), Expect = 6e-13
Identities = 263/398 (66%), Gaps = 13/398 (3%)
Strand=Plus/Plus
Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246
|||||||||| || ||||| || ||||| || || ||||||||||| ||||| || | |
Sbjct 1120773 CAATAGGACCGACACCAGGGCCACCACCACCGTGGGGAATACAGAAGGTCTTGTGGAGGT 1120832
Query 138247 TTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTT 138305
| ||||| || ||||| ||||| ||| |||| || ||||| | ||| || ||
Sbjct 1120833 TAAGATGGCAGACATCAGCACCGATA-TCACCGGGAGAGCAAAGACCAATCTGGGCGTTC 1120891
Query 138306 AGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGT 138365
| || ||||| || | || || ||||||||| || ||||| | | || | ||
Sbjct 1120892 ATGTTGGCACCGTCCATGTAGACGAGACCACCATGCTCGTGAACAAGATCGCAGACTTGC 1120951
Query 138366 CTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGT 138425
| || | | ||||| |||||| || || || || || | ||| ||| | ||
Sbjct 1120952 TTAATCTCGGGCTCAAAGACACCAAAGGTAGAGGGGTAGGTGACCATGATAGCAGCAAGC 1121011
Query 138426 TCAAATGTATTCATGATT-GCTTTCTT---CTCTAGATCTTTGATGTCTATGTTGCCA-T 138480
|| || | || || || ||| || ||||| | ||||| | ||| ||| |
Sbjct 1121012 TC----GTCAGCGTGCTTGGCACACTTGGCCTTGAGATCCTCAATGTCCAGGTTACCAGT 1121067
Query 138481 CAT--CATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATT 138538
| | | || ||||||||| || || ||||| || ||||| | || ||||| ||
Sbjct 1121068 CTTGCCGTCGCACTTGACAGTGACGACCTTCATACCAGCCATAGCAGCCGAGGCAGGGTT 1121127
Query 138539 AGTTCCATGTGCTGACTCTGGTATCAGACATACATTTC 138576
|| || || || || | || ||||| || || ||||
Sbjct 1121128 GGTACCGTGGGCAGAAACAGGGATCAGGCAGACCTTTC 1121165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578998211825520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |