Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 125 9e-23 seq3 122 1e-21 seq1 111 2e-18 >seq4 Length=8156551 Score = 125 bits (138), Expect = 9e-23 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | ||||||||||| |||||||| || ||||| | || |||||| | || |||||| Sbjct 1853143 GCCTCTAACTACCTCGATATCAAGCCCCTTCTCGACGTCGGATGCAAGACCGTCGCCAAC 1853084 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||| | ||||||||||||||||||||||| || |||| Sbjct 1853083 ATGATCAAGGGCAAGGCACCCGAGGAGATCCGCAAGACCTTCAATATCA 1853035 >seq3 Length=7873615 Score = 122 bits (134), Expect = 1e-21 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| || || || |||||||| || | |||||||| Sbjct 1402995 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGA 1402936 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || || | ||| | ||| | ||| || | ||| ||| ||||| Sbjct 1402935 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTTAAGCC 1402876 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || |||||||| || || Sbjct 1402875 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 1402816 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || || ||||| || ||| || || || | || || Sbjct 1402815 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGGGTACC 1402756 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| | ||||| |||| ||||| |||| | |||||| || ||| || Sbjct 1402755 GGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 1402696 Score = 118 bits (130), Expect = 1e-20 Identities = 177/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | |||||| |||||| |||||||||||||| | || ||||| Sbjct 2196698 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 2196757 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | | || Sbjct 2196758 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCCACG 2196817 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| |||||||| || ||||||||||| ||||||| || ||||||||||| Sbjct 2196818 AGGAGGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 2196877 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| | | ||||| | ||| || ||||| ||| ||| Sbjct 2196878 AGAGCACAAGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATA 2196937 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 2196938 ATGT-CCTGG 2196946 Score = 93.3 bits (102), Expect = 5e-13 Identities = 187/269 (70%), Gaps = 15/269 (6%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| || || ||||||||||| |||||||||||||| |||||| | || Sbjct 2197034 TCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAG 2197091 Query 869261 AAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAA 869318 || || ||| ||| ||||| ||||| ||||| ||||| | | || |||| |||| Sbjct 2197092 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAA 2197151 Query 869319 AGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCA 869375 || | ||| | |||| | |||||| || ||||| || ||||| || | | Sbjct 2197152 AG--GAAGAG----TTCTTGTCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGA 2197205 Query 869376 CCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACA 869434 | || | ||||| | |||| ||||||| || | | ||| |||||||||| Sbjct 2197206 TGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATG 2197264 Query 869435 TAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||| ||||| ||||| || || || || Sbjct 2197265 TAGGTATCGATGAGGAGGGAGTATGTTTC 2197293 >seq1 Length=11834931 Score = 111 bits (122), Expect = 2e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| |||||||| || || ||||| ||||| | ||| | || ||||||||| Sbjct 5539190 GACAGCACTGGCGGCACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 5539249 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| | Sbjct 5539250 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 5539309 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| |||||| | ||| ||| || Sbjct 5539310 AAGGCCTTCGAGCTAGGCTCCGGCTT 5539335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137066318242