Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 9e-23
seq3 122 1e-21
seq1 111 2e-18
>seq4
Length=8156551
Score = 125 bits (138), Expect = 9e-23
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| | ||||||||||| |||||||| || ||||| | || |||||| | || ||||||
Sbjct 1853143 GCCTCTAACTACCTCGATATCAAGCCCCTTCTCGACGTCGGATGCAAGACCGTCGCCAAC 1853084
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||| | ||||||||||||||||||||||| || ||||
Sbjct 1853083 ATGATCAAGGGCAAGGCACCCGAGGAGATCCGCAAGACCTTCAATATCA 1853035
>seq3
Length=7873615
Score = 122 bits (134), Expect = 1e-21
Identities = 207/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| ||| || || || |||||||| || | ||||||||
Sbjct 1402995 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGA 1402936
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | ||| | ||| || | ||| ||| |||||
Sbjct 1402935 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTTAAGCC 1402876
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || |||||||| || ||
Sbjct 1402875 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 1402816
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || || ||||| || ||| || || || | || ||
Sbjct 1402815 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGGGTACC 1402756
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||| |||| ||||| |||| | |||||| || ||| ||
Sbjct 1402755 GGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 1402696
Score = 118 bits (130), Expect = 1e-20
Identities = 177/250 (71%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | |||||| |||||| |||||||||||||| | || |||||
Sbjct 2196698 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 2196757
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| ||||| | | ||
Sbjct 2196758 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCCACG 2196817
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| ||||| |||||||| || ||||||||||| ||||||| || |||||||||||
Sbjct 2196818 AGGAGGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 2196877
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| | | ||||| | ||| || ||||| ||| |||
Sbjct 2196878 AGAGCACAAGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATA 2196937
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 2196938 ATGT-CCTGG 2196946
Score = 93.3 bits (102), Expect = 5e-13
Identities = 187/269 (70%), Gaps = 15/269 (6%)
Strand=Plus/Plus
Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260
|||||| |||| || || ||||||||||| |||||||||||||| |||||| | ||
Sbjct 2197034 TCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAG 2197091
Query 869261 AAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAA 869318
|| || ||| ||| ||||| ||||| ||||| ||||| | | || |||| ||||
Sbjct 2197092 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAA 2197151
Query 869319 AGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCA 869375
|| | ||| | |||| | |||||| || ||||| || ||||| || | |
Sbjct 2197152 AG--GAAGAG----TTCTTGTCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGA 2197205
Query 869376 CCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACA 869434
| || | ||||| | |||| ||||||| || | | ||| ||||||||||
Sbjct 2197206 TGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATG 2197264
Query 869435 TAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
||||| ||||| ||||| || || || ||
Sbjct 2197265 TAGGTATCGATGAGGAGGGAGTATGTTTC 2197293
>seq1
Length=11834931
Score = 111 bits (122), Expect = 2e-18
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| |||||||| || || ||||| ||||| | ||| | || |||||||||
Sbjct 5539190 GACAGCACTGGCGGCACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 5539249
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| |
Sbjct 5539250 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 5539309
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192
|||| |||||| | ||| ||| ||
Sbjct 5539310 AAGGCCTTCGAGCTAGGCTCCGGCTT 5539335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107137066318242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |