Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 seq2 93.3 4e-14 >seq3 Length=7873615 Score = 156 bits (172), Expect = 4e-33 Identities = 425/638 (67%), Gaps = 31/638 (5%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||||||||||||||| || | || ||| ||||||||| ||||| |||| | | || Sbjct 1403256 CTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCA 1403197 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 | || || |||||||| | |||| |||||||| || ||| ||| ||||||| ||||| Sbjct 1403196 TTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATC 1403137 Query 139422 CGGAATCCACAAAGC---GAACAG--CA-AATCGCGCGCCTTCTTATCTTCCGAACCCAT 139475 || ||||| | ||| |||||| || | |||| ||| || | ||||| | Sbjct 1403136 AGGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCT-TTCCG------T 1403084 Query 139476 GTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATG 139533 | | | |||| | | |||||| || || ||||| ||||||||||| || || |||||| Sbjct 1403083 GGTTC-TTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATG 1403025 Query 139534 GCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAAT 139590 || | || || || ||| ||||| || ||||||| || ||| || ||||| Sbjct 1403024 GCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAAC 1402965 Query 139591 ACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACT 139646 || |||| ||| || | | |||| | | || || ||||| || | | | | | | Sbjct 1402964 ACACGCAGCATGGGAACAATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCA 1402905 Query 139647 GTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAA 139706 || || |||| || | || | ||| || || || | | ||||| || | Sbjct 1402904 GT----GGCACGGATTCGGTGGGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCAT 1402849 Query 139707 AACGCAA-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCA 139765 | ||| || | | || ||||| ||||| |||||||| |||| ||| || | Sbjct 1402848 GGCACAAGTCTTG-AGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAA 1402790 Query 139766 GAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGT 139825 | |||||||| || || || || || || ||||| |||| ||| || ||||| | Sbjct 1402789 GGAAGCATGATGAGAGCTGAGGCTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCAT 1402730 Query 139826 GCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884 | ||||| | ||| || ||||| | | ||| || || | | | | | ||||||| Sbjct 1402729 GAGTGAAGAACTTGCTT-GACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCA 1402671 Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 || ||| || |||| ||||||||| | |||||| || Sbjct 1402670 CCCCAGATCCCAACAGCGACTCGCATGATCATATGCTG 1402633 >seq2 Length=8944178 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | ||||| || |||||||| ||||| || || | Sbjct 2592073 ACCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCA 2592014 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || ||||| || ||||| || || || || || ||| Sbjct 2592013 TCTGATACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGAT 2591954 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||| || ||||| || ||||| |||||| | | | | ||||| || Sbjct 2591953 CAGCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTAC 2591894 Query 24881 AACATTCAAAAGGAATCGACACTACA 24906 || || || ||||| ||||| || || Sbjct 2591893 AATATCCAGAAGGAGTCGACTCTCCA 2591868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897453783280