Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 4e-33
seq2 93.3 4e-14
>seq3
Length=7873615
Score = 156 bits (172), Expect = 4e-33
Identities = 425/638 (67%), Gaps = 31/638 (5%)
Strand=Plus/Minus
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361
||||||||||||||| || | || ||| ||||||||| ||||| |||| | | ||
Sbjct 1403256 CTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCA 1403197
Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421
| || || |||||||| | |||| |||||||| || ||| ||| ||||||| |||||
Sbjct 1403196 TTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATC 1403137
Query 139422 CGGAATCCACAAAGC---GAACAG--CA-AATCGCGCGCCTTCTTATCTTCCGAACCCAT 139475
|| ||||| | ||| |||||| || | |||| ||| || | ||||| |
Sbjct 1403136 AGGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCT-TTCCG------T 1403084
Query 139476 GTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATG 139533
| | | |||| | | |||||| || || ||||| ||||||||||| || || ||||||
Sbjct 1403083 GGTTC-TTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATG 1403025
Query 139534 GCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAAT 139590
|| | || || || ||| ||||| || ||||||| || ||| || |||||
Sbjct 1403024 GCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAAC 1402965
Query 139591 ACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACT 139646
|| |||| ||| || | | |||| | | || || ||||| || | | | | | |
Sbjct 1402964 ACACGCAGCATGGGAACAATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCA 1402905
Query 139647 GTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAA 139706
|| || |||| || | || | ||| || || || | | ||||| || |
Sbjct 1402904 GT----GGCACGGATTCGGTGGGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCAT 1402849
Query 139707 AACGCAA-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCA 139765
| ||| || | | || ||||| ||||| |||||||| |||| ||| || |
Sbjct 1402848 GGCACAAGTCTTG-AGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAA 1402790
Query 139766 GAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGT 139825
| |||||||| || || || || || || ||||| |||| ||| || ||||| |
Sbjct 1402789 GGAAGCATGATGAGAGCTGAGGCTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCAT 1402730
Query 139826 GCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884
| ||||| | ||| || ||||| | | ||| || || | | | | | |||||||
Sbjct 1402729 GAGTGAAGAACTTGCTT-GACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCA 1402671
Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922
|| ||| || |||| ||||||||| | |||||| ||
Sbjct 1402670 CCCCAGATCCCAACAGCGACTCGCATGATCATATGCTG 1402633
>seq2
Length=8944178
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || | ||||| || |||||||| ||||| || || |
Sbjct 2592073 ACCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCA 2592014
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || || ||||| || ||||| || || || || || |||
Sbjct 2592013 TCTGATACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGAT 2591954
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || || ||||| || ||||| || ||||| |||||| | | | | ||||| ||
Sbjct 2591953 CAGCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTAC 2591894
Query 24881 AACATTCAAAAGGAATCGACACTACA 24906
|| || || ||||| ||||| || ||
Sbjct 2591893 AATATCCAGAAGGAGTCGACTCTCCA 2591868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897453783280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |