Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq3 150 3e-30
seq4 125 1e-22
>seq3
Length=7873615
Score = 150 bits (166), Expect = 3e-30
Identities = 224/311 (72%), Gaps = 15/311 (5%)
Strand=Plus/Plus
Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421
|||||| ||||| || || ||||||||||| |||||||||||||| ||||||| | |
Sbjct 2197034 TCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAA--G 2197091
Query 794422 AAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAA 794479
|| || ||| ||| ||||| ||||| ||||| ||||| | || || |||| ||||
Sbjct 2197092 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAA 2197151
Query 794480 A---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCA 794536
| || || | | ||| |||||| || ||||| || ||||| || | |
Sbjct 2197152 AGGAAGAGTTCTTGTCCTG------GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGA 2197205
Query 794537 CCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACG 794595
| || | ||||| | |||| ||||||| || | || | | |||||||||| |
Sbjct 2197206 TGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG-CTGGGCAGGGTCCTTGATG 2197264
Query 794596 TAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAG 794655
||||| ||||||||||| ||||| || || ||||||||||| || || |||||||||
Sbjct 2197265 TAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAA 2197324
Query 794656 CCATAAAAGCA 794666
||||| |||||
Sbjct 2197325 CCATAGAAGCA 2197335
Score = 125 bits (138), Expect = 1e-22
Identities = 170/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|||||| |||||| |||||||||||||| | || ||||| |||||| | |||
Sbjct 2196716 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 2196775
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036
||||||| | | ||| ||||||| ||||| | | | || ||||| |||||||||
Sbjct 2196776 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCCACGAGGAGGCGATCGGCGACG 2196835
Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095
||||| |||||||| ||||||| || ||||||||||| || || || ||| || |
Sbjct 2196836 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGAGCACAAGGG-AGAGC 2196894
Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148
|||| ||| ||||| | ||| || ||||| ||| |||| || | |||||
Sbjct 2196895 CTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 2196946
>seq4
Length=8156551
Score = 125 bits (138), Expect = 1e-22
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| | ||||||||||| ||||||||||| ||||| | || ||||||||||| ||||||
Sbjct 1853143 GCCTCTAACTACCTCGATATCAAGCCCCTTCTCGACGTCGGATGCAAGACCGTCGCCAAC 1853084
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||| | |||||||| |||||||||||||| || ||||
Sbjct 1853083 ATGATCAAGGGCAAGGCACCCGAGGAGATCCGCAAGACCTTCAATATCA 1853035
Score = 104 bits (114), Expect = 4e-16
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 5270637 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 5270578
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | |||||||||||| ||||
Sbjct 5270577 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 5270546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243634261414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |