Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-19 >seq1 Length=11834931 Score = 114 bits (126), Expect = 1e-19 Identities = 262/392 (67%), Gaps = 3/392 (1%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| |||||| || || | ||||| |||||||| | ||| || ||||| ||||| Sbjct 2755572 TTCTCAACGGCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCAATC 2755631 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || || | ||||||| ||||| || | | || | |||| || Sbjct 2755632 TGGGGAACACCACGGGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTG 2755691 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || ||| | || ||||||||| | | |||||| || ||| || || Sbjct 2755692 TTGTCCTTGGTGCGCTGACGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTG 2755751 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || || | || | || || ||| || || ||||| || ||||| | || Sbjct 2755752 TCGGAGAAGGTAGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATG 2755811 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | |||||||| ||||||||||| || || | ||| ||||| ||||| | ||| |||| Sbjct 2755812 AGCTTGGTCATCATACCACCAGCGGTCTCGATACCGAGAGAGAGAGGGGCGACGTCAAGG 2755871 Query 281717 AGGACAATAT--TTTGAAGTTTTTC-ATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 |||| ||| | || | || || | | || | |||| |||||||| || || | | Sbjct 2755872 AGGAGAATCTCGTTGGTAGCCTTGCTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACA 2755931 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATT 281805 || ||||| || |||||||| |||||||| || Sbjct 2755932 GCGGCACCGTAGGCAACAGCCTCATCAGGGTT 2755963 Score = 113 bits (124), Expect = 3e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | ||||| || |||||||| |||||||||||| | ||||||||| Sbjct 3032954 GGTAAGGAAGGTCGTCTCAGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 3033013 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||| | || || | ||| | || || ||||| |||| | ||| Sbjct 3033014 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCACGAGGTCGGTGTGCCTCGAAGTATC 3033073 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 || | || ||||||| | ||| | |||||| Sbjct 3033074 GCCAGAACCCTTACTTATCCCGAGACTGTAAC 3033105 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 |||||||||||||| | ||||||||||| |||||| | ||| |||| || | || ||| Sbjct 3034397 GAATTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 3034456 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| |||||||| ||||| || | | |||||| |||||||| Sbjct 3034457 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 3034503 Score = 86.0 bits (94), Expect = 5e-11 Identities = 193/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| ||||| ||||||||||| ||||| | ||| | || | |||| | || Sbjct 2756460 ACGAGACGGTTATCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACC 2756519 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || |||| | | |||| ||||| ||| |||||||| | ||| Sbjct 2756520 TCGAAGATACCCTCCTCAATGGTAAGGAGAGAGACATCGAAGGTACCACCACCAAGATCG 2756579 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || || || ||||| || || | || ||| Sbjct 2756580 AAGATGAGGACGTTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAGGCGATGGCGGCA 2756639 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || || |||| | ||| || ||||| || || || ||||| || Sbjct 2756640 GCGGTAGGCTCGTTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCGGCATCCTTG 2756699 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || || || | || || ||||| || || ||||| || || | |||||| Sbjct 2756700 GTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACGGTGACAACGGC 2756749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629123509876