Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq3 134 1e-26
seq2 118 1e-21
seq1 107 2e-18
>seq3
Length=7873615
Score = 134 bits (148), Expect = 1e-26
Identities = 156/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||| ||||| || ||||| |||| || ||| | | | ||||||||
Sbjct 6200845 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 6200903
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || || | || || ||||||||||| || ||||| || |||||||| |||
Sbjct 6200904 CTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT 6200963
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | |||| ||||||| | |||||| || | ||||| || || ||
Sbjct 6200964 CTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 6201023
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || |||||||||||||||
Sbjct 6201024 CGTGAGGGTCTTGACGAAAATCTGCATG 6201051
>seq2
Length=8944178
Score = 118 bits (130), Expect = 1e-21
Identities = 151/206 (73%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514
||| | ||| ||||| ||||| || ||||| || | || ||| ||||||||||
Sbjct 2591639 ATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT--ACGGCCGTCCTCGAGC 2591696
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| |||| | ||||||||||| ||||||||||| ||||| || ||||
Sbjct 2591697 TGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATC 2591756
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | ||||||| | ||| || || | ||||| ||| |||||
Sbjct 2591757 TTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCT 2591816
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||| || |||||
Sbjct 2591817 GTGAGGGTCTTGACGAAGATTTGCAT 2591842
Score = 107 bits (118), Expect = 2e-18
Identities = 139/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520
||| || || ||||| || ||||| ||| | || || || |||||||||||||||
Sbjct 2591363 GGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCG--TCCTCGAGCTGCTTG 2591420
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| |||| | ||||||||||| |||||||| || |||||||| ||||| |
Sbjct 2591421 CCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGAC 2591480
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | || | ||||||| | ||| || || | ||||| ||| ||||||||||
Sbjct 2591481 TTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGTCTTGCCGGTCAAG 2591540
Query 133641 GTTTTTACGA 133650
|| || ||||
Sbjct 2591541 GTCTTGACGA 2591550
Score = 102 bits (112), Expect = 8e-17
Identities = 144/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| |||||||| || | || | | | |||||||||||||||||
Sbjct 2591874 GTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCA-TCCTCGAGCTGCTTGCC 2591932
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | |||||||| || || ||||| || |||||||| ||||| |||
Sbjct 2591933 GGCGAAAATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTT 2591992
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | || || | | ||| || |||| ||| | || |||||||||| ||
Sbjct 2591993 GACATTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 2592052
Query 133643 TTTTACGAAAATCTGCATGG 133662
|| ||||| ||||||||||
Sbjct 2592053 CTTGACGAAGATCTGCATGG 2592072
>seq1
Length=11834931
Score = 107 bits (118), Expect = 2e-18
Identities = 119/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | |||||||| || || |||||||| ||||||
Sbjct 6500990 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTG 6500931
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | ||||| | | ||| || |||| ||||| |
Sbjct 6500930 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 6500871
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663
|| ||||| ||||| || || |||||| ||| |||||
Sbjct 6500870 GTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 6500835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420642888240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |