Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq2 98.7 9e-16 >seq3 Length=7873615 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||| || ||| || | || || ||||||||||| ||||| Sbjct 6200859 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 6200918 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | | |||||||||| |||||| ||| | || Sbjct 6200919 GATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 6200977 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || |||||||| | |||||||| || ||||| | || || | Sbjct 6200978 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 6201037 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 6201038 CGAAAATCTGCAT 6201050 >seq2 Length=8944178 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || |||| || |||||||| || || || Sbjct 2591651 CTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2591710 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||| | || |||||| ||| |||||| ||| | | | Sbjct 2591711 AATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGACTTGACATT 2591770 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||| | ||||| || || || || | || || || Sbjct 2591771 GTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGAC 2591830 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 2591831 GAAGATTTGCAT 2591842 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | |||||| |||| || |||||||| || || || Sbjct 2591370 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 2591429 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | ||| | | |||||||||| ||||| ||| | ||| Sbjct 2591430 ATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTT 2591488 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| || || ||||| | ||||| || || || ||||| || || || Sbjct 2591489 GTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 2591548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793453492080