Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 109 8e-19 >seq3 Length=7873615 Score = 109 bits (120), Expect = 8e-19 Identities = 586/925 (63%), Gaps = 16/925 (2%) Strand=Plus/Minus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTATCTCTGTACA 69335 || || || || ||||| || ||||||| || ||| |||| || ||||| || || Sbjct 1403474 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1403416 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 || || | | ||| || || || || | || || ||||| || ||| || Sbjct 1403415 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1403356 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455 |||||| || || || || | ||||| || |||| | || | ||| | | ||||| Sbjct 1403355 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1403296 Query 69456 GACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATAT 69510 | ||| || || | |||| || ||| |||| | || || | | ||| | Sbjct 1403295 CTTCTGAGCCTTGATA---GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1403239 Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570 |||| || ||||| || || | ||| | | ||||| ||||| || || ||||| Sbjct 1403238 AGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATG 1403181 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 | | ||| | | | || || || ||||| || ||||| || ||||||||||| Sbjct 1403180 AGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCC 1403121 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 | || || || | | | || || ||||| || ||| ||||| || ||| Sbjct 1403120 AGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAAC 1403061 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 || | | || | |||||||| || || || || || | | | || ||||| || || Sbjct 1403060 TCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTA 1403001 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | ||| | |||||||| || | || | |||||| |||| |||||| Sbjct 1403000 CCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCG 1402941 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG-A 69869 || || ||||||| || || | || ||| || | || || || | | | Sbjct 1402940 TTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTT 1402882 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || || || || || ||||| || || || | |||||| || | || || || || Sbjct 1402881 TAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 1402822 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT 69989 ||| || ||||| || || |||| | || ||| || || || | ||| | ||| Sbjct 1402821 ACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGG 1402762 Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 || || || || || || || || || |||||||| | || || | || || Sbjct 1402761 GGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTT 1402702 Query 70050 GTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||||| || | | || ||||| ||| | || || | ||||| ||||| | Sbjct 1402701 GTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATCCCAACAGCGACTCGCATGA 1402643 Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 ||||||||| || || || | ||||| | || | | || ||||||| | || Sbjct 1402642 TCATATGCTGCGGGCGCTCAGCAATTTTACCGTCAATCTGTAGCAAGTATGATCTGGACA 1402583 Query 70169 GAGTTTTAAACCCAAAATAGTTGTA 70193 | ||| || |||||||||||||| Sbjct 1402582 GGGTTCGGAAGCCAAAATAGTTGTA 1402558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908576754640