Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 >seq3 Length=7873615 Score = 161 bits (178), Expect = 1e-34 Identities = 1071/1702 (63%), Gaps = 55/1702 (3%) Strand=Plus/Minus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 |||| || |||||||||||||| || |||||||| || |||||||| || | ||| Sbjct 1404362 GCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGC 1404303 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 || || | |||| | ||| || | |||| | ||| | | || || ||| Sbjct 1404302 ATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGA 1404243 Query 117948 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCC 118004 || |||||| || || || || ||||| | |||| ||| || || ||| Sbjct 1404242 TCAATGAAGGCACCACGGTCAGCAGCCATCTG---CACAACCTGTCGCTGAGAAATCTCC 1404186 Query 118005 CACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAT 118064 ||||||||| |||| || ||| || || | ||||| | ||| || ||||| || Sbjct 1404185 CACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAA 1404126 Query 118065 CC---ACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTG 118121 || | | || ||| || | | ||||||| | | ||||| ||||| || | Sbjct 1404125 CCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACA 1404069 Query 118122 AGATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTC 118178 ||||||| |||| || |||||||| ||||| || || ||| || | Sbjct 1404068 AGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGT 1404012 Query 118179 AGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTG 118238 | ||||| |||| ||||| |||||||||||||| ||||| || | || || | || Sbjct 1404011 TGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTA 1403952 Query 118239 GAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGT 118298 ||| || ||||| || || | ||| || ||||| |||| ||| | | | | Sbjct 1403951 CTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCC 1403892 Query 118299 TCCTTGAGAGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACT 118356 || ||| | ||||| || | | | || | || | | |||||| ||||||| Sbjct 1403891 TCTCGGAGGGGTTCCCAATCCCAAAGATCAGAG--GGCTTGACATTCCACATGTCAAACT 1403834 Query 118357 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 |||| ||||| | || || || || |||| || || || || || || ||| | Sbjct 1403833 GGAGAATACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGG 1403774 Query 118417 CCAATT-CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 | | || | || || ||||| || || || || || || || || | ||| Sbjct 1403773 CGAGTTGCACAGA-CGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTC 1403715 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535 | | |||||| || ||||| | | ||| || || |||| |||||| Sbjct 1403714 AGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGA 1403655 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 ||||| ||||| || ||||| || || || | ||| || || ||||| | || Sbjct 1403654 CCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACA 1403595 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || || ||||| | | | || | ||| | ||||| | |||| || Sbjct 1403594 GGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCG 1403535 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCG 118712 || ||||| | | | || | || || ||||||| ||| | || || | Sbjct 1403534 TGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATGAAAGAGGGCAGAGAC 1403478 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 | || || || || || |||| | |||||| | ||| || || || || ||| Sbjct 1403477 AAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTG 1403418 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 |||| ||| || || ||||| || | ||||||||| || ||| || || | Sbjct 1403417 CACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGA 1403358 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | || | || ||||| || |||| || ||||| || | ||| Sbjct 1403357 TCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAA 1403298 Query 118893 A-CATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAG 118949 | | || | ||| || | | | ||| | || |||| |||||||||| ||| Sbjct 1403297 AGCTTCTG-AGCCTTGATAGACTTGCGACCCTTACCCTCTCT--CTCGTACTTTTCGTAC 1403241 Query 118950 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAA 119008 || || ||||| || ||||| | || | || || || || || |||| || | Sbjct 1403240 AGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGG-GCATTCGTTGGGGCACAT 1403182 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||||| ||||| || | ||| || ||||||||||| || || |||||||| || || Sbjct 1403181 GAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1403122 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 | ||| || || ||| ||| | || || | || || || || | || | || Sbjct 1403121 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAA 1403062 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 119185 || | || || |||||||| || || ||||| | |||| | || | | || Sbjct 1403061 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACC---AGGTCGCTT 1403005 Query 119186 ---ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 |||| |||||| || || | |||||| ||| || ||||| ||||| |||| || Sbjct 1403004 GTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAAT 1402945 Query 119243 ACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGG 119300 ||| | ||| ||||| || || ||| || ||| | | |||| | || |||| Sbjct 1402944 ACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCC--AGTGGCACGGATTCGGTGG 1402887 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 || | |||||||| || ||| ||| || || || || | |||| | || Sbjct 1402886 GCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 1402827 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 ||||| ||||| || ||| |||| | | | |||||||| || | |||||| Sbjct 1402826 TAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGC 1402767 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACA 119478 || ||||| |||||||| | ||| || |||| || ||| | | |||| |||| Sbjct 1402766 TGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGA--AGAACTTGCTTGACA 1402709 Query 119479 TCTTGTCGTAGGTCTCCAAGAC 119500 | || ||| ||||||||||| Sbjct 1402708 TGAGGTTGTATGTCTCCAAGAC 1402687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434999008560