Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 192 7e-44 seq4 93.3 5e-14 >seq3 Length=7873615 Score = 192 bits (212), Expect = 7e-44 Identities = 962/1511 (64%), Gaps = 61/1511 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||| || || | || || || || || ||||| ||| Sbjct 1402629 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGT 1402688 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||| |||| | | ||| ||| || | || || | Sbjct 1402689 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCGAGCCCCACTTTG 1402746 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| ||| || || | || ||||||||| | | | |||||| Sbjct 1402747 TTCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAG 1402806 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 1402807 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 1402866 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| | || ||| | | |||| | ||| || || || Sbjct 1402867 GGTGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 1402926 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| || | |||||| |||| ||||| || || || ||| ||| || || || Sbjct 1402927 AATGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 1402986 Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| | ||| || || |||| |||| |||||||||||| Sbjct 1402987 GTCGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGG 1403043 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | ||||||||||| | || ||||| || | ||||||| ||| Sbjct 1403044 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGC 1403103 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || || ||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 1403104 GCT--CGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 1403161 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809 || ||| | ||| ||||| | || || || || || |||||||| | || | Sbjct 1403162 GGAACGGCGAATGGACTCTCATGTGCCCCAACGAATGC-CCTGGTCTTGCTGACTGCTAC 1403220 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || ||||| || || ||| |||||||||| ||| ||| || | | || | Sbjct 1403221 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 1403278 Query 104870 GTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || ||| | || | | ||| | || ||||| || | || || |||||||| | Sbjct 1403279 CTATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAAC 1403337 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| || ||| || | ||||| || |||||||| | ||| Sbjct 1403338 CCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAACCTTGGTACC 1403397 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||| || || || || ||| | |||| | | |||||| ||| Sbjct 1403398 ATCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCT 1403457 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACA 105097 || || ||||| || || | |||| || ||| |||| ||| | | Sbjct 1403458 GTTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTCATCAACTATGAAGATGC--TTGCT 1403515 Query 105098 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 | ||| || | | || || ||||| || || || ||| | || | ||| Sbjct 1403516 ACGAC--TTCA-----AGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAAC 1403568 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | | || || || ||||| || | |||||||| || ||| | ||| Sbjct 1403569 AAGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCAC 1403628 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG---TCGCCAC 105274 || || |||||||| |||||||| |||||||| |||| | ||| ||| || || Sbjct 1403629 CGACCCATTGGTCTTGGTGTTCAAGGTCTCGCTGATG----CCTTCCTTGCCCTCCGCAT 1403684 Query 105275 G-CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 | | ||||| || ||| || || | || || || || |||||||| || || Sbjct 1403685 GCCCTTTGAGTCTCCCGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCA 1403744 Query 105334 CGCCGCTCTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391 || || ||| | | || || | | | || ||| || ||||| || ||||| Sbjct 1403745 TGCTGCCCTTACCACGTCTGTGCA-ACTCGCCA-AGGAGGAAGGTCCCTACTCCACCTTC 1403802 Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451 ||||||| || || || | || | || || ||||| |||||| | | || || Sbjct 1403803 AAGGGTTCCCCTGCCTCTGAGGGTATTCTCCAGTTTGACATGTGGAATGTCAAGCCCTCT 1403862 Query 105452 CTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 || | || |||||| | ||| || ||||| | ||| | || |||||| Sbjct 1403863 GATCTTTGGGATTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGT 1403922 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || ||| | ||||| ||||| || ||| ||| | || || | || || || || ||| Sbjct 1403923 CTGCTCGTTGCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGC 1403982 Query 105572 TTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 105631 ||||| || ||||| | |||||||| | | || ||| || || ||||| | || Sbjct 1403983 TTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTT 1404042 Query 105632 GTCAA---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 105688 ||||| | || |||| |||| || || || ||||| |||||| | | |||| Sbjct 1404043 GTCAACCCCTGGCTTCTCAAGGAT---CTTGTCGACATGGGTCTTTGGTCCGATGCTATG 1404099 Query 105689 AAGGATCTCAT 105699 ||| | | ||| Sbjct 1404100 AAGAACCGCAT 1404110 Score = 134 bits (148), Expect = 2e-26 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGT 94794 |||| || || | |||||| ||||||||||| || ||| | | |||| | | | Sbjct 2197214 TTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAACTC-T 2197156 Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||||||| |||| || | || ||||| |||||||||||||||||| ||| || Sbjct 2197155 TCCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCC 2197096 Query 94855 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 || ||| | || | |||||||||||||| || |||||||| ||||| |||| ||||| Sbjct 2197095 TT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAA 2197037 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| || |||||||| ||||| || ||| || ||||| Sbjct 2197036 CGAGCTCATTTCTCGTGATGAGGGTCTTCACACTGACTTTGC 2196995 >seq4 Length=8156551 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||| || || |||| ||| || || || | ||| | | |||| || Sbjct 1494904 GGCATCAATCTCGTCGATAAAGATGATACAAGGAGCGTTCTTACGACCCTCGGCAAATAG 1494963 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9821 ||| ||||| ||| | || ||||||||||||||||| || || | | | || || Sbjct 1494964 ATCTCGTACTCGCGAAGGTCCAACACCAACAAACATCTCGACGAATTCGGAGCCGCTCAC 1495023 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1495024 ACT-GAAGAAGGGCACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1495082 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 1495083 TACCAGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1495142 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 ||||||| ||||| ||||| Sbjct 1495143 ---TCTCAGGCTGCTTCAAGAA 1495161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260610440240