Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 385 5e-102 >seq3 Length=7873615 Score = 385 bits (426), Expect = 5e-102 Identities = 1137/1731 (66%), Gaps = 45/1731 (3%) Strand=Plus/Minus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||| || | ||||||||||| ||||||||||| |||||| || | |||||| | Sbjct 1404358 GTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGC 1404299 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | | | |||| ||| | |||| || |||| |||||||| ||||| ||||| || | Sbjct 1404298 TGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGATCAA 1404239 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | ||||| ||||| || ||||| | | ||| || | ||||||||| | | Sbjct 1404238 TGAAGGCACCACGGTCAGCAGCCATCTGCACAACCTGTCGCTGAGAAATCTCCCACACAG 1404179 Query 78368 TCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACCGGC 78425 || ||| | ||||| | ||| | |||||| | | ||| | | | |||| Sbjct 1404178 TCTTGTACAGAGCCTTGATCTCGGCAGGGATGTT--GGGGATGTTCTGGATAGAACCGT- 1404122 Query 78426 TCGCA-CAAT--TTCA-TTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCC 78481 | || |||| | | ||||| || | | ||| || || | ||||||| Sbjct 1404121 TATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAGATCCT 1404062 Query 78482 GGA----CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 || ||||| |||| | | ||||||||| || ||| ||||| ||||| Sbjct 1404061 TGAGAAGCCAGG----GGTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAG 1404006 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGC 78596 ||||||| ||||| ||||| ||||| ||||||||| || | ||||| | ||| ||| Sbjct 1404005 ATGTTGGAGGTGTAAGGCTC-AAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGC 1403947 Query 78597 GGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT 78656 ||| ||||| || || || || ||| || || | ||| || ||||||| || | Sbjct 1403946 GGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCG 1403887 Query 78657 TAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGAT 78710 ||| | ||||||| ||| | | || ||||||||| || || || Sbjct 1403886 GAGGGGTTCCCAATCCCAAAGATCAGAGGGCTTGACATTCCACATGTCAAACTGGAGAAT 1403827 Query 78711 ACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTC 78770 |||||| || || || || |||||||| || ||| | || |||||||||||||||| Sbjct 1403826 ACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGGCGAGTT- 1403768 Query 78771 GCAT-GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC 78829 ||| ||| | ||||| || ||||| | | ||||||||| |||||| ||||| | Sbjct 1403767 GCACAGACGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCAC 1403708 Query 78830 GCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGA 78889 | |||| || || || | | || ||| | |||| |||| || || || || | Sbjct 1403707 GAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGACCTTGAA 1403648 Query 78890 CGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAA 78949 | || | | | || |||||||| ||||||||||| || || ||| | | | ||||| Sbjct 1403647 CACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGT 1403588 Query 78950 AGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATT 79009 ||| ||||||| ||||| || || || || |||| ||||||| || | Sbjct 1403587 GGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCT 1403528 Query 79010 TGGCGAAATCAAA---ATGAT-TTCCT--TTGATGAAAGTCGGTAGGCACAGCGATGCCA 79063 | ||| || | | || ||| | |||||||||| || || ||| || || | Sbjct 1403527 TCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATGAAAGAGGGCAGAGACAAGGAGGCAA 1403468 Query 79064 GGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123 ||||||| || || ||| || ||| | || ||||| || ||||||| || | Sbjct 1403467 GGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCACAGGTTGG 1403408 Query 79124 ACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 | ||| |||||| || | |||||| ||||||||||| || ||| |||||||| Sbjct 1403407 AG--CTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCCTTGTA 1403350 Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCG 79241 | |||| | || | || ||||| ||| || |||| | ||| ||| | | | | Sbjct 1403349 GAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTG 1403290 Query 79242 GGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAA 79301 ||| || | ||| | ||||| | ||||| | ||||| | | || Sbjct 1403289 AGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAA 1403230 Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361 | || || ||| || | || || ||||| |||| |||||||| || ||| || Sbjct 1403229 TTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGTCCATTC 1403170 Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTC 79421 ||| | |||| || || |||||| || || |||||||| || ||| ||| ||||| Sbjct 1403169 GCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTC 1403110 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481 || || | |||||| | || |||||| || || || || || || | || ||| Sbjct 1403109 ACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACGTC 1403050 Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541 ||||||||| ||||| || ||||||||||| | ||| |||||| || ||||||| Sbjct 1403049 GGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTC 1402990 Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCC 79601 |||||| || || ||||||||||| || || |||||||| || || |||| || || Sbjct 1402989 GACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGAAGTACC 1402930 Query 79602 GTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCG--AGCAGTGGATTCCGATG 79659 || || ||| ||| | || | || || | |||| | || | || || Sbjct 1402929 ATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGA--TTCGGTGGGCGTTTAAGCCAATA 1402872 Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719 || || | | |||||| || || || |||||| || |||||||| || || || Sbjct 1402871 CCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATCAATG 1402812 Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779 ||| ||||||||| | || |||||||| || | ||| || | ||||||||| Sbjct 1402811 CTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGGGTACCGGCG 1402752 Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT--TTGGCTCATCAGATCGTACGTCT 79837 ||||| | || || |||| || ||||||||||| ||| ||| || | ||| |||| Sbjct 1402751 TTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTG--ACATGAGGTTGTATGTCT 1402694 Query 79838 CCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 || ||| ||| | ||||| || ||| || || ||||| ||||||| Sbjct 1402693 CCAAGACACGCTCAATATCGTCACCCCAGATCCCAACAGCGACTCGCATGA 1402643 Score = 361 bits (400), Expect = 6e-95 Identities = 919/1378 (67%), Gaps = 34/1378 (2%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||||||||| || || ||| || ||||| | ||| ||| ||||||||| Sbjct 1402643 TCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGTCTTGGAGACATACA 1402702 Query 19176 ACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234 |||| ||| | || ||||||||||| || |||| || || | |||||||||||||| Sbjct 1402703 ACCTCATGT-CAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTGTTCAACGCCGGTACC 1402761 Query 19235 AACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 | || ||| | || || ||||| || | ||||||||| ||||||||||| || Sbjct 1402762 CCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAGGACAGCATTGATGGT 1402821 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 |||||||| || |||||| || || || |||||| | | || ||||| || | Sbjct 1402822 ATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTA 1402881 Query 19355 CACTGCT--CGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCG 19412 || | ||||| ||| | | ||| | ||| || || || || || Sbjct 1402882 AACGCCCACCGAAT--CCGTGCCACTGGCTCTTACATCGCCGGTACCAATGGTACTTCCA 1402939 Query 19413 ACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGG 19472 ||||||| || || ||||| || || ||||||||||| || | |||||| ||||||| | Sbjct 1402940 ACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAGGGTG 1402999 Query 19473 GCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGG 19532 | ||| || || | |||||||||||||| |||||||||||||| |||||| | | Sbjct 1403000 GTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCACGCCGACGTCTTCG 1403059 Query 19533 ATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCA 19592 | ||||| || || || |||||| || | |||||| | ||| ||| ||||| ||| Sbjct 1403060 AGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGCTCGTGACCTGTTCC 1403119 Query 19593 CGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACC 19652 ||| | ||||| || || || |||||| || || |||| | ||| |||||| | Sbjct 1403120 TGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGGAACGGCGAATGGACTC 1403179 Query 19653 TGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGT 19712 | |||||||| ||||||||||||| || | ||| |||||| || | || | | Sbjct 1403180 TCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTGCTACGGTGACGAATTTGAGGCTC 1403239 Query 19713 TGTACCGGACTTACG-TAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTC 19771 ||||| | |||| || || || || ||| || ||| | | | | Sbjct 1403240 TGTACGAAAAGTACGAGAGAGAGGGTAAGGGTC-GCAAGTCTATCAAGGCTCAGAAGCTT 1403298 Query 19772 TGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGA- 19830 ||| || | | || | |||| ||||| || | || | |||| ||||||||| Sbjct 1403299 TGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAACCCTTTCATGCTCTACAAGGAT 1403358 Query 19831 CGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC--AAGTCGTCCAACCTG 19888 | | || | || |||| || || |||||| | || | ||| ||| ||||||||| Sbjct 1403359 CACTGCAATCG-CAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAG--CTCCAACCTG 1403415 Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 || ||||| ||||| || | | || || ||| || || || || || || ||| Sbjct 1403416 TGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGTTTGCAACCTTGCCTCC 1403475 Query 19949 CTGTGCCTGCCGACTTTCGTCA------AGGCCTCCTCCTTCGACTTTGCCAAATTGTAC 20002 ||| ||||| ||||| ||| | | | | || |||||| || || || Sbjct 1403476 TTGTCTCTGCCCTCTTTCATCAACTATGAAGATGCTTGCTACGACTTCAAGAAGCTGCAC 1403535 Query 20003 GAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCG 20062 ||||| || | || || || ||| |||| ||||||| ||| ||||| Sbjct 1403536 GAGGTCACTCAAGTTGTTGTCCGCAATTTGAACAAGATCATCGACGTCAACCACTACCCT 1403595 Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122 | | | ||| || || || ||||| ||||| || || | | || || || || Sbjct 1403596 GTCCAAGAGGCTCGTAACAGCAACATGCGTCACCGACCCATTGGTCTTGGTGTTCAAGGT 1403655 Query 20123 CTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTC 20182 || || || | ||| | ||| || | | || || |||| |||| || ||||| Sbjct 1403656 CTCGCTGATGCCTTCCTTGCCCTCCGCATGCCCTTTGAGTCTCCCGAGGCTCGTGAGCTG 1403715 Query 20183 AACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CCTGGAATCGTGCGAACTCG 20240 |||||| ||||||||| || | ||||| || ||||| || | | |||| |||||| Sbjct 1403716 AACAAGCAAATCTTCGAGACCATCTACCATGCTGCCCTTACCACGTCT-GTGC-AACTCG 1403773 Query 20241 CCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCC 20300 |||| ||||| || || ||| || |||||||| || || || || |||||||| |||| Sbjct 1403774 CCAAGGAGGAAGGTCCCTACTCCACCTTCAAGGGTTCCCCTGCCTCTGAGGGTATTCTCC 1403833 Query 20301 AGCCGGACATGTGGGGCGTCA------CTGA-GAATGAGTTTTGGAGCGCCCTCAAGGTT 20353 || ||||||||| |||| |||| || | || ||| | ||||| | Sbjct 1403834 AGTTTGACATGTGGAATGTCAAGCCCTCTGATCTTTGGGATTGGGAAC-CCCTCCGAGAG 1403892 Query 20354 GAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCG 20413 || ||||||| ||||| | |||||| ||||||| || || ||||| |||||| Sbjct 1403893 GATGTCAAGACTCACGGTATCCGCAACAGTCTGCTCGTTGCTCCTATGCCTACCGCCAGT 1403952 Query 20414 ACCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTAC 20470 ||| | ||||| | || ||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 1403953 ACCTCGCAGATTCTTGGCAACAACGAGTGCTTT-GAGCCTTACACCTCCAACATCTAC 1404009 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 || ||||| || ||||| | |||||||| ||| || || ||||||||| || | Sbjct 2197155 TCCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCC 2197096 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 || | | || ||||||||||| ||||||||||||||||| || ||||| || |||||| Sbjct 2197095 TTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAAC 2197036 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| ||||| || || ||||| || || Sbjct 2197035 GAGCTCATTTCTCGTGATGAGGGTCTTCA 2197007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524621729440