Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 219 5e-52 seq4 113 5e-20 >seq3 Length=7873615 Score = 219 bits (242), Expect = 5e-52 Identities = 514/770 (67%), Gaps = 22/770 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| || | ||||||| ||||| | || ||| |||||||| ||||||| Sbjct 1402630 CCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGTC 1402689 Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297 ||||| ||| || | ||| ||| |||| ||| || || || | || || ||| Sbjct 1402690 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTGT 1402747 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 ||||||| ||||| || |||||| | || |||||||| || | |||||||| | Sbjct 1402748 TCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAGG 1402807 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 || || || || |||||||| || |||||| |||||| || |||||| | | | Sbjct 1402808 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 1402867 Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 ||||||| || | || | |||| ||||||| | ||| | ||| || || Sbjct 1402868 GTGGTATTGGCTTAAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 1402925 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 || || || | || || || || ||||| || || ||||||||||| || || || Sbjct 1402926 CAATGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 1402985 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 |||| ||||||||||| ||||| || | |||||||||||||| ||||| ||||| Sbjct 1402986 CGTCGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCA 1403045 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 ||||||| | | ||||| || || || || ||| || || | || ||| | ||| Sbjct 1403046 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGC 1403105 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||||| ||||| ||||| || || || |||||| | || |||| | | Sbjct 1403106 TCGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGGAA 1403165 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTG 53774 || || ||| || |||||||| ||||| ||||| || | | | | || |||||||| Sbjct 1403166 CGGCGAATGGACTCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTG-CTACGGTG 1403224 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGA 53828 | || ||| | | |||| | |||| | | | |||| ||| ||| Sbjct 1403225 ACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGGGTCGC------AAGT 1403278 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | || | ||| | || || || || |||| ||||| |||| | Sbjct 1403279 CTATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAACC 1403338 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | | |||| |||||||||| ||| ||||||||||| |||||| Sbjct 1403339 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAAC 1403388 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786 |||||| | ||| ||| |||||||||||| | ||| | || || | | ||| | Sbjct 1404161 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 1404219 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | ||| Sbjct 1404220 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 1404279 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 1404280 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 1404339 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 1404340 ATGTACTACCTCCGTAC 1404356 >seq4 Length=8156551 Score = 113 bits (124), Expect = 5e-20 Identities = 208/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||| |||| || | ||||| ||||| |||||||| || || | || || Sbjct 5453645 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 5453586 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| || | Sbjct 5453585 TTTCCACTGGGTTCTAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGC--AAGGC 5453528 Query 152146 ACAATCGTGCCCTGCAGACTCGCTT---CACCGTGGTGATACGCCGTCTGCTCCGCGATG 152202 |||| || |||| || | || |||||||||| || |||||||| || | | Sbjct 5453527 -CAATAATGGTCTGCTGAAGTGATTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACA 5453469 Query 152203 TATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA 152262 || || ||||| | | |||||| |||| | ||| || |||||| || ||||| Sbjct 5453468 TAACCTGCCAATTCAACAACCTTCTTGTCTTTAATCAAATTTCTCTTGAAGCACGCGTAG 5453409 Query 152263 ATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATG 152322 || || |||||||| ||||| || || |||| || ||||| || ||| || || Sbjct 5453408 ATGACTTTGCGCTGACCGGGTTTGAATCCATCCAGAACAGATGGAATAGATCGCATGTTG 5453349 Query 152323 TC 152324 || Sbjct 5453348 TC 5453347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215822154800