Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 3e-20
seq1 98.7 2e-15
seq2 86.0 1e-11
>seq3
Length=7873615
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| || ||||| || ||||||||||| ||| | || | |||||
Sbjct 6200838 GAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 6200897
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || |||||||| | ||||||||||| | ||| || ||||| ||
Sbjct 6200898 CTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 6200957
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | |||| ||| ||| || ||||| || || ||
Sbjct 6200958 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 6201017
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| ||||| ||||| | ||||||
Sbjct 6201018 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6201050
Score = 102 bits (112), Expect = 2e-16
Identities = 191/273 (70%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 115639 TTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTCTTTT 115698
|||||| |||||||||| |||||||| ||| || ||||| |||| ||| | |
Sbjct 1403126 TTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGGAACGGCGAATGGACTCTCATGT 1403185
Query 115699 GTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTTTACG 115758
| ||||| ||| ||||||||||| ||| || ||| || |||||| ||| ||||
Sbjct 1403186 GCCCCAACGAATGCCCTGGTCTTGCTGACTGCTACGGTGACGAATTTGAGGCTCTGTACG 1403245
Query 115759 AAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTGGCAT 115817
||| |||||||| |||||| ||| | | || | | | ||||| || | |||||| |
Sbjct 1403246 AAAAGTACGAGAGAGAGGGTAAGGGTCGCAA-GTCTATCAAGGCTCAGAAGCTTTGGTAC 1403304
Query 115818 CATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGC-GTACAAAGATGCAGT 115876
|| |||| | ||| ||||| |||| |||||| ||| ||||| ||| || |
Sbjct 1403305 GCCATTCTTGAGGCCCAGACAGAGACTGGAA-ACCCTTTCATGCTCTACAAGGAT-CACT 1403362
Query 115877 -TTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908
||| |||||||| |||||||| | ||||
Sbjct 1403363 GCAATCGCAAGAGCAACCAAAAGAACCTTGGTA 1403395
>seq1
Length=11834931
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | |||| ||||| || || || |||||||||||
Sbjct 6501023 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6500964
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | |||||| |||| | ||| || ||||| || || || || |||||| | ||
Sbjct 6500963 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6500904
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| ||| ||| || || || || || || |||||||| || |||||||||||
Sbjct 6500903 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6500845
>seq2
Length=8944178
Score = 86.0 bits (94), Expect = 1e-11
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || ||||| || || || || ||||||||||| |||| | |||| || ||
Sbjct 2591349 AGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 2591408
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || |||||||| || | | ||||||||| | | ||| || ||||| ||
Sbjct 2591409 TCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 2591468
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || ||||| | || | |||| || ||| || ||||| || || ||
Sbjct 2591469 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGTC 2591528
Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094
||||| || | ||||| ||||
Sbjct 2591529 TTGCCGGTCAAGGTCTTGACGA 2591550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820415633446
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |