Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 >seq3 Length=7630574 Score = 120 bits (132), Expect = 3e-22 Identities = 205/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || ||||||||||| ||| ||| |||||||||| ||||||||||| Sbjct 2145546 GGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCA 2145605 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 ||||| || || || |||||||| || || | || || || || || |||||| | Sbjct 2145606 TGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAATCGCT 2145665 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 | | || || || || |||||||||||| || ||||| || || | || || | Sbjct 2145666 CAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAATGTGGGAGA 2145725 Query 17406 TGAAATATTTTTCGTCCGGTGTAAGAAC----GCGCCAGTCCTTTAAATCTTTGGATATA 17461 |||| |||| ||||||| || | ||| | |||||| | | ||| ||||| | | Sbjct 2145726 TGAAGTATTGCTCGTCCGAAGTCA-AACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGA 2145784 Query 17462 TCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || | || || | ||||| || ||| ||||||| || ||||| | ||| || Sbjct 2145785 TCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCCAGAT 2145840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545574122720