Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 149 7e-31 >seq3 Length=7630574 Score = 149 bits (164), Expect = 7e-31 Identities = 626/973 (64%), Gaps = 18/973 (2%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1351486 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || || | |||||| || | || | ||| || ||||| || || ||| Sbjct 1351485 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1351426 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | ||||| || |||||| || | ||| || | ||| | Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1351366 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAA 53946 ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 1351365 CTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1351309 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCA 54005 ||||| ||||| || | || | ||| ||||| ||||| | || ||||| | Sbjct 1351308 AGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGA 1351250 Query 54006 ACGACCACTCTCCGTCATCCT-TC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063 | ||| || |||| |||| || || || ||||| || |||||||| ||||||||||| Sbjct 1351249 GAGTCCATTCGCCGT--TCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1351192 Query 54064 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 | || || || | | | ||||| ||||| |||||| ||||| ||||| Sbjct 1351191 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAA 1351132 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | | | || | ||||| || || | ||| |||| | | ||||| || ||||| Sbjct 1351131 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1351072 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||||| Sbjct 1351071 ACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACC 1351012 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG- 54302 ||||| | ||||||||| |||| ||| || ||| ||||||| || | | | Sbjct 1351011 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 1350953 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 || || || || || ||||| || || || | || || || | ||||| |||| Sbjct 1350952 TTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 1350893 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | || || || || || ||| |||| | || || || || || | || | | Sbjct 1350892 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTG 1350833 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 || || || || || || || || || || || || | || || | || | Sbjct 1350832 GGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGT 1350773 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 54541 |||| ||||| | | || ||||| || | || || || ||||| ||||| Sbjct 1350772 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATCCCAACAGCGACTCGCATG 1350714 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 | ||| ||||| || | ||| | || || || || | |||||||| ||| | | Sbjct 1350713 ATCATATGCTGCGGGCGCTCAGCAATTTTACCGTCAATCTGTAGCAAGTATGATCTGGAC 1350654 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTG 54661 | ||| || |||||||||||||| ||||| || || || | ||| |||||| | Sbjct 1350653 AGGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCG 1350594 Query 54662 AGTTTATCCTTAT 54674 |||| || |||| Sbjct 1350593 AGTTCCTCTTTAT 1350581 Score = 132 bits (146), Expect = 6e-26 Identities = 358/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| |||||||| || | | ||| | ||||||||||| | || || ||||| ||||| Sbjct 2145298 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2145357 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 |||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 2145358 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2145417 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCA---TAACCGGCGCTGTCATGTATCCA-CTTTTGAG 24324 ||||| |||| ||| | | || || | |||| || ||||| | || | Sbjct 2145418 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2145476 Query 24325 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 24384 ||||||| ||||||||| | ||||| || || || | || || ||||| || | Sbjct 2145477 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2145536 Query 24385 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 | | || || | || ||||| || | || || |||| || || |||| Sbjct 2145537 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2145596 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 | || || || || || || ||||| |||| |||||||| ||||| || || | Sbjct 2145597 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2145656 Query 24505 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 24564 ||||| || | | || ||||| || || ||||| ||| || || || || | | Sbjct 2145657 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2145716 Query 24565 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 24621 || || || |||| ||||| | || | | || ||||| || | || ||| | Sbjct 2145717 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2145776 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2145777 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2145836 Query 24682 AGAT 24685 |||| Sbjct 2145837 AGAT 2145840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721570313920