Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq3 95.1 1e-14 >seq2 Length=8818970 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||| |||||||| || || || ||||| | Sbjct 2562977 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAG 2563036 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || |||| | || |||||| ||| ||| Sbjct 2563037 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGG 2563096 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| ||||||| | ||| Sbjct 2563097 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACC 2563156 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| ||||||||||| || || ||||| || || ||||| Sbjct 2563157 TCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2563203 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || |||||||| |||||||| ||||| | Sbjct 2562749 CCACCACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAG 2562808 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || |||| | || ||||||||| || Sbjct 2562809 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2562868 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || | | ||| ||| || | ||| Sbjct 2562869 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACC 2562928 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || ||||| || |||||||| Sbjct 2562929 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | || |||| || | || || ||||| || ||||| ||||| | Sbjct 2562466 TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 2562525 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || ||||||| ||||| ||||| || |||| | || ||||||||| || Sbjct 2562526 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 2562585 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| ||||| || || | | ||| ||| || | ||| Sbjct 2562586 GATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAAC 2562645 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | ||| |||||||||||||| || || ||||| Sbjct 2562646 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 2562681 >seq3 Length=7630574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| || ||||| ||||| | Sbjct 6114369 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6114428 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || ||| | ||||||| |||||||||| ||| Sbjct 6114429 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6114488 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | | | || || | |||| Sbjct 6114489 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 6114548 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | || ||||| || || ||||| Sbjct 6114549 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259179414864