Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 230 2e-55 seq2 129 6e-25 seq1 129 6e-25 >seq3 Length=7630574 Score = 230 bits (254), Expect = 2e-55 Identities = 542/808 (67%), Gaps = 14/808 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 2145840 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2145781 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | || |||| |||||| | |||||| Sbjct 2145780 TCCAAGGATCTCCA-CGACTGGAACAACCGTTTGACTTCGGACGAGCAATACTTCATCTC 2145722 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| ||| ||||||||||||||| ||||| || || ||||| Sbjct 2145721 CCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAGCG 2145662 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | ||||||| || |||||||| || || |||||| || Sbjct 2145661 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGAT 2145602 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928 ||||||| | ||||| |||| || || ||||||||| || ||| | | | || | Sbjct 2145601 GGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTGC 2145542 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | | | | | || |||||| | || || || || ||| || | ||||||| Sbjct 2145541 CCA-GCGTACATAC--CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGC 2145485 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | || |||||| | || | | |||| | |||| || || || Sbjct 2145484 GGATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTGC 2145425 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 || || ||||| ||||| ||||||| || || || |||| || |||||||| Sbjct 2145424 TTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAA 2145365 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || |||| || |||||||||||| || | || ||||| Sbjct 2145364 GAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGGG 2145305 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||| || |||||||||||| | || | || | | || | ||| Sbjct 2145304 TCTTCACACTGACTTTGCCTGTCTCCTCCACTCTCACCTCAAGGGACGTGCCAGCAAACA 2145245 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || ||| || ||||||| || || | || |||||| ||||||||||| || Sbjct 2145244 GATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTCCTCACCGAGGC 2145185 Query 117289 GCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 || || |||| |||||| || | || | | | ||| ||| |||||||| |||| Sbjct 2145184 TCTCCCTTGTGC-TCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCG 2145126 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 ||||||| | || || | | || | | || ||| ||||| | ||||||| Sbjct 2145125 TCGCCGATCGCCTCCTCGTGGCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTT 2145066 Query 117408 TGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| ||| | ||||| |||||| Sbjct 2145065 TCGACTTCATGGAGAACATCTCCCTTGG 2145038 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 6114595 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 6114536 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| |||||| ||||||| Sbjct 6114535 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 6114477 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || ||||| || || | |||||||| | ||||||||| Sbjct 6114476 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6114417 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 6114416 CATCCAGAAGGAGTCCACCCTTCA 6114393 >seq2 Length=8818970 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| | || ||||| | || Sbjct 2562975 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 2562916 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | || || ||||||||||| | |||||| Sbjct 2562915 GACACTATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2562856 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 2562855 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCAGACTACAAC 2562796 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || ||||| || Sbjct 2562795 ATTCAGAAGGAGTCAACCCTTCATCTCGT 2562767 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || | || ||||| ||||||||| | || || || | |||||| | Sbjct 2562683 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGACACTATCG 2562624 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || |||| ||||| ||||| ||||| | |||||||| ||| | Sbjct 2562623 ACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGATTG 2562565 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || |||| || |||||| ||||||||||||||||||| Sbjct 2562564 ATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAG 2562505 Query 40879 GAGGCCACGCTGCATCTAGT 40898 || | || || || || || Sbjct 2562504 GAATCAACCCTTCACCTGGT 2562485 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || || ||| |||| || || | | Sbjct 2563203 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 2563144 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || |||| ||||| ||||| |||||| |||| ||| Sbjct 2563143 GATACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 2563084 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| ||||| || || | || |||||| |||||||| Sbjct 2563083 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAT 2563024 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 2563023 ATCCAGAAGGAGTCGACTCTCCATCTCGT 2562995 >seq1 Length=11717239 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | | Sbjct 6373448 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 6373507 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| |||| ||||| ||| | Sbjct 6373508 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 6373567 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 6373568 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 6373627 Query 40879 G 40879 | Sbjct 6373628 G 6373628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219174239040