Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 122 8e-23 seq1 104 2e-17 seq2 91.5 1e-13 >seq3 Length=7630574 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 6114387 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6114446 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || || ||||||||||| Sbjct 6114447 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 6114506 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||| | ||| | ||| || Sbjct 6114507 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6114566 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || |||||||||||| Sbjct 6114567 CCCGTGAGGGTCTTGACGAAAATCTGCATG 6114596 >seq1 Length=11717239 Score = 104 bits (114), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | || || |||||||||||| || || ||| |||| Sbjct 6373626 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6373567 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||||||||| || || |||||||||||||| || || || || | ||| Sbjct 6373566 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6373507 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| ||||||||||| ||| | || ||||| ||||| || || || ||| Sbjct 6373506 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 6373447 Query 118731 ATCTGCATGGC 118741 ||| ||||| Sbjct 6373446 --CTGGATGGC 6373438 >seq2 Length=8818970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || || ||||| || | || || |||||||||||| Sbjct 2563001 TGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGC 2563060 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| | || | ||||||||||| || || || ||||||||||| ||| || Sbjct 2563061 TTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTG 2563120 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| || || | ||| ||||||| ||| | || ||||||||| Sbjct 2563121 GACTTGACATTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTC 2563180 Query 118716 AGAGTTTTTACAAAAATCTGCATGG 118740 | || || || || |||||||||| Sbjct 2563181 AAGGTCTTGACGAAGATCTGCATGG 2563205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830378850768