Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-15 >seq1 Length=11717239 Score = 98.7 bits (108), Expect = 2e-15 Identities = 267/405 (66%), Gaps = 34/405 (8%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| |||| ||| |||| |||||||| ||||| || ||||| || ||||||| Sbjct 3974937 CTCCCTCACATGCTGTTCTACGGCCCTCCCGGTACAGGAAAAACGTCGACTGTCCTGGCA 3974996 Query 254061 CTGGCCC-GAACCCTGTTGGGCGAGGGGAACATGAGAGAGC---GCGTGCTCGAGCTGAA 254116 ||||| | | | | ||| | | |||||| || | ||||| ||||| || Sbjct 3974997 CTGGCGAAGGAGCTTTATGGTCCCG----ACATGATCAAGTCGAGAGTGCTTGAGCTCAA 3975052 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCCAAGA 254175 |||||| || ||||| || | | ||||||| || ||| |||||| |||| | | | Sbjct 3975053 CGCTTCCGATGAACGTGGTATCTCCATCGTCCGAGAAAAGGTCAAGAACTTTGCGCGA-A 3975111 Query 254176 TGTCGATTTCGTCGTTCCAACCC---GG------------------CTGTCCGCCTTTCA 254214 || | ||| | | || |||| || ||| || || |||| Sbjct 3975112 TG-CAATT--GACCAACCCACCCCCTGGATACAAAGACAAATATCCCTGCCCTCCGTTCA 3975168 Query 254215 AGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCC 254274 || || | ||||| |||||||| ||| ||||||| || || ||| ||| || || | Sbjct 3975169 AGATCATCATCCTCGACGAGGCCGACTCCATGACCCAAGATGCCCAGAGCGCACTACGAC 3975228 Query 254275 GAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGA 254334 |||| ||||||||| || | | || ||||| || ||| | ||||||||||| | Sbjct 3975229 GAACCATGGAGACGTACAGCAAGATCACTCGTTTCTGTCTGATTTGCAACTACGTCACTC 3975288 Query 254335 AGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| || | ||||| || ||| ||| ||| || ||||||| Sbjct 3975289 GGATTATAGATCCGCTCGCCAGTCGATGCAGCAAATTCCGATTCA 3975333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766344969472