Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3 264 1e-65
seq2 98.7 9e-16
>seq3
Length=7630574
Score = 264 bits (292), Expect = 1e-65
Identities = 622/934 (67%), Gaps = 4/934 (0%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| ||||| || || ||||| || || ||| || | || || || ||
Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1351485
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || | |||||||| || |||||||| ||||
Sbjct 1351484 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCC 1351425
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | || ||||| ||| | ||| | || || ||| |
Sbjct 1351424 TTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGC 1351365
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||||||| | | | | | || ||| || ||| ||||||||||| ||||| ||
Sbjct 1351364 TTCTGAGCCTTGATA-GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 1351306
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
||||||||| ||||||| ||||| || || || || ||| | || ||||||||| |
Sbjct 1351305 CTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGT 1351246
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| || | || || || |||| |||||||| || ||||| ||||| |||
Sbjct 1351245 CCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCAGGAA 1351186
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
||| || || ||||| |||||||| || ||| ||||||| | ||| | || || ||
Sbjct 1351185 CAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAA 1351126
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
||||| || ||||| ||||| ||||| | ||| || || || |||| ||| || || ||
Sbjct 1351125 GACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCACC 1351066
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||||||||| || ||||||||| |||| | ||||| || || | |||||||||
Sbjct 1351065 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGA 1351006
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| || || || | || || | || || | ||| ||| || ||
Sbjct 1351005 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTTAAGCC 1350946
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || || || || || ||||| || || || || || |||||||| || ||
Sbjct 1350945 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 1350886
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG-CGCTTTGGGCGTAG 23744
||||||||||| || | | || | ||| || || || | || ||| |||| |||
Sbjct 1350885 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGG-GTAC 1350827
Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804
|||| ||||| || ||||| || || || ||| | | ||||| || ||||| |
Sbjct 1350826 CGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATG 1350767
Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864
| || | | | ||||| || || || || || | ||||| ||||| ||||| |
Sbjct 1350766 TCTCCAAGACACGCTCAATATCGTCACCCCAGATCCCAACAGCGACTCGCATGATCATAT 1350707
Query 23865 ATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTT 23924
|| || | ||| | | |||| ||| | | || ||||| | || |||
Sbjct 1350706 GCTGCGGGCGCTCAGCAATTTTACCGTCAATCTGTAGCAAGTATGATCTGGACAGGGTTC 1350647
Query 23925 TAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958
|| |||||||||| ||||| ||||| |||||
Sbjct 1350646 GGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATC 1350613
Score = 100 bits (110), Expect = 3e-16
Identities = 223/331 (67%), Gaps = 4/331 (1%)
Strand=Plus/Minus
Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAA--TG 22298
|||| |||||| |||||| || || || || || || || ||||| | | ||| ||
Sbjct 1352330 TTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCA-CAACCTG 1352272
Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATT 22358
| ||| || || ||||| || ||||||||||| | ||||||| || ||
Sbjct 1352271 T-CGCTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGG 1352213
Query 22359 CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418
||| |||||| || ||||||| ||||| || || || | |||| ||| |
Sbjct 1352212 GGATGTTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAA 1352153
Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478
||| ||| || | ||| |||| || |||| || || || |||||||| | |
Sbjct 1352152 GACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAA 1352093
Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538
||| ||||||||||| |||||||| ||| | || || || | || ||||| || || |
Sbjct 1352092 GGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAA 1352033
Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569
|||| | ||| ||||| ||||| || ||
Sbjct 1352032 TCTGCGAGGTACTGGCGGTAGGCATAGGAGC 1352002
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||| ||||| || || || || ||||||||| | || || || | ||
Sbjct 6114596 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 6114537
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | || | ||||| | || ||||||||| || | || || |||||
Sbjct 6114536 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 6114477
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || ||||| || ||| | || || || ||||||| || ||
Sbjct 6114476 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6114417
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || ||||| |||| ||
Sbjct 6114416 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 6114384
>seq2
Length=8818970
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| || |||||||| || |||||| | || || || | |||
Sbjct 2562975 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 2562916
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | ||||| | || ||| ||||| ||| | || || ||||||
Sbjct 2562915 GACACTATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2562856
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| ||||| ||| | || ||| || | || || |||
Sbjct 2562855 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCAGACTACAAC 2562796
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || |||||||| || ||
Sbjct 2562795 ATTCAGAAGGAGTCAACCCTTCATCTCGTCCT 2562764
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| |||| ||||| || |||||| | || ||||| | ||||||| | |||
Sbjct 2562683 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGACACTATCG 2562624
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| | || ||||||||| || | || || ||||||||||| | |
Sbjct 2562623 ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGA 2562564
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| ||||| ||||| ||| | || ||| || | ||| || ||||| || || |
Sbjct 2562563 TTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 2562504
Query 31383 AATCGACTCTTCATCTGGTACTT 31405
|||| || ||||| ||||| |||
Sbjct 2562503 AATCAACCCTTCACCTGGTCCTT 2562481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766377711680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |