Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 264 1e-65 seq2 98.7 9e-16 >seq3 Length=7630574 Score = 264 bits (292), Expect = 1e-65 Identities = 622/934 (67%), Gaps = 4/934 (0%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || ||| || | || || || || Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1351485 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || |||||||| |||| Sbjct 1351484 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCC 1351425 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 1351424 TTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGC 1351365 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | | | || ||| || ||| ||||||||||| ||||| || Sbjct 1351364 TTCTGAGCCTTGATA-GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 1351306 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||||||| ||||||| ||||| || || || || ||| | || ||||||||| | Sbjct 1351305 CTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGT 1351246 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || | || || || |||| |||||||| || ||||| ||||| ||| Sbjct 1351245 CCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCAGGAA 1351186 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 ||| || || ||||| |||||||| || ||| ||||||| | ||| | || || || Sbjct 1351185 CAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAA 1351126 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 ||||| || ||||| ||||| ||||| | ||| || || || |||| ||| || || || Sbjct 1351125 GACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCACC 1351066 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||||||||| || ||||||||| |||| | ||||| || || | ||||||||| Sbjct 1351065 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGA 1351006 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | || || || | || || | || || | ||| ||| || || Sbjct 1351005 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTTAAGCC 1350946 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || || || |||||||| || || Sbjct 1350945 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 1350886 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG-CGCTTTGGGCGTAG 23744 ||||||||||| || | | || | ||| || || || | || ||| |||| ||| Sbjct 1350885 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGG-GTAC 1350827 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804 |||| ||||| || ||||| || || || ||| | | ||||| || ||||| | Sbjct 1350826 CGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATG 1350767 Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864 | || | | | ||||| || || || || || | ||||| ||||| ||||| | Sbjct 1350766 TCTCCAAGACACGCTCAATATCGTCACCCCAGATCCCAACAGCGACTCGCATGATCATAT 1350707 Query 23865 ATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTT 23924 || || | ||| | | |||| ||| | | || ||||| | || ||| Sbjct 1350706 GCTGCGGGCGCTCAGCAATTTTACCGTCAATCTGTAGCAAGTATGATCTGGACAGGGTTC 1350647 Query 23925 TAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 || |||||||||| ||||| ||||| ||||| Sbjct 1350646 GGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATC 1350613 Score = 100 bits (110), Expect = 3e-16 Identities = 223/331 (67%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAA--TG 22298 |||| |||||| |||||| || || || || || || || ||||| | | ||| || Sbjct 1352330 TTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCA-CAACCTG 1352272 Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATT 22358 | ||| || || ||||| || ||||||||||| | ||||||| || || Sbjct 1352271 T-CGCTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGG 1352213 Query 22359 CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418 ||| |||||| || ||||||| ||||| || || || | |||| ||| | Sbjct 1352212 GGATGTTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAA 1352153 Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478 ||| ||| || | ||| |||| || |||| || || || |||||||| | | Sbjct 1352152 GACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAA 1352093 Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538 ||| ||||||||||| |||||||| ||| | || || || | || ||||| || || | Sbjct 1352092 GGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAA 1352033 Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569 |||| | ||| ||||| ||||| || || Sbjct 1352032 TCTGCGAGGTACTGGCGGTAGGCATAGGAGC 1352002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 6114596 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 6114537 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| || | || || ||||| Sbjct 6114536 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 6114477 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 6114476 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6114417 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || ||||| |||| || Sbjct 6114416 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 6114384 >seq2 Length=8818970 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || |||||||| || |||||| | || || || | ||| Sbjct 2562975 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 2562916 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||| ||||| ||| | || || |||||| Sbjct 2562915 GACACTATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2562856 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || ||| || | || || ||| Sbjct 2562855 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCAGACTACAAC 2562796 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || |||||||| || || Sbjct 2562795 ATTCAGAAGGAGTCAACCCTTCATCTCGTCCT 2562764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| |||| ||||| || |||||| | || ||||| | ||||||| | ||| Sbjct 2562683 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGACACTATCG 2562624 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| || | || || ||||||||||| | | Sbjct 2562623 ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGA 2562564 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| ||||| ||| | || ||| || | ||| || ||||| || || | Sbjct 2562563 TTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 2562504 Query 31383 AATCGACTCTTCATCTGGTACTT 31405 |||| || ||||| ||||| ||| Sbjct 2562503 AATCAACCCTTCACCTGGTCCTT 2562481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766377711680