Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 >seq3 Length=7630574 Score = 134 bits (148), Expect = 2e-26 Identities = 391/589 (66%), Gaps = 16/589 (3%) Strand=Plus/Minus Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 65800 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1351486 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 || || | |||||| || | || | ||| || ||||| || || ||| Sbjct 1351485 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1351426 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920 ||| || || ||||| || | ||||| || |||| | || | ||| || | ||| | Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1351367 Query 65921 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACA 65976 | || ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 1351366 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1351310 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATC 66035 || || ||||| || | || | ||| ||||| ||||| | || ||||| Sbjct 1351309 GAGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATG 1351251 Query 66036 AACGACCACTCTCCGTCATCCT-TC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093 | | ||| || |||| |||| || || || ||||| || |||||||| |||||||||| Sbjct 1351250 AGAGTCCATTCGCCGT--TCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1351193 Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 66153 | | || | || | | | ||||| ||||| |||||| ||||| |||| Sbjct 1351192 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1351133 Query 66154 ACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 66213 || | | | || ||||| || || | ||| ||||| | | ||||| || |||| Sbjct 1351132 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGT 1351073 Query 66214 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273 | || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| Sbjct 1351072 TACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATAC 1351013 Query 66274 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 | ||||| ||||||||||| |||| ||| || ||| | ||||| || Sbjct 1351012 CGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT 1350964 Score = 132 bits (146), Expect = 6e-26 Identities = 358/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| |||||||| || | | ||| | ||||||||||| | || || ||||| ||||| Sbjct 2145298 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2145357 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 |||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 2145358 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2145417 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCA-CTTTTGAG 36347 ||||| |||| ||| | || || || | |||| || ||||| | || | Sbjct 2145418 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2145476 Query 36348 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 36407 ||||||| ||||||||| | ||||| || || || | || || ||||| || | Sbjct 2145477 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2145536 Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 | | || || | || ||||| || | || || |||| || || |||| Sbjct 2145537 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2145596 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 | || || || || || || ||||| |||| |||||||| ||||| || || | Sbjct 2145597 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2145656 Query 36528 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 36587 ||||| || | | || ||||| || || ||||| ||| || || || || | | Sbjct 2145657 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2145716 Query 36588 CATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644 || || || |||| |||| | || | | || ||||| || | || ||| | Sbjct 2145717 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2145776 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2145777 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2145836 Query 36705 AGAT 36708 |||| Sbjct 2145837 AGAT 2145840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172767091360