Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 >seq3 Length=7630574 Score = 141 bits (156), Expect = 1e-28 Identities = 368/556 (66%), Gaps = 10/556 (2%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| ||||||||||| | | ||| | ||||||||||| | || || ||||| ||||| Sbjct 2145298 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2145357 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 2145358 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2145417 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCA-CTTTTGAG 42254 ||||| |||| ||| | || || || | |||| || ||||| | || | Sbjct 2145418 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2145476 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 ||||||| ||||||||| | ||||| || || || | ||| || ||||| || | Sbjct 2145477 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2145536 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 | | || || | || |||||||| | || || |||| || || |||| Sbjct 2145537 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2145596 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | || || ||||| || || ||||| |||| ||||||| | ||| || || | Sbjct 2145597 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2145656 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 ||||| ||| | | || || || || || ||||| ||| || || || || | | Sbjct 2145657 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2145716 Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTCCAATCATTGATATCTT 42551 || || || |||| ||||||| || || || ||||| || | || ||| | Sbjct 2145717 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2145776 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | || || | ||||| || || || |||||||| || ||||| | || Sbjct 2145777 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2145836 Query 42612 AGA--TATCATGATAT 42625 ||| ||||| || || Sbjct 2145837 AGATCTATCAGGAAAT 2145852 Score = 131 bits (144), Expect = 2e-25 Identities = 449/686 (65%), Gaps = 18/686 (3%) Strand=Plus/Minus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || || || || ||||| || ||||||| || || |||| || || |||||||| Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1351485 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || || | |||||| || | || | ||| || ||||| || || |||| Sbjct 1351484 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCC 1351425 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || || || || | ||||| || |||| | || | ||| || | ||| | | Sbjct 1351424 TTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA-G 1351366 Query 71884 ACTC-GAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATAT 71937 || ||||||| || | |||| | ||| ||||| ||||| | | ||| | Sbjct 1351365 CTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1351309 Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-CCAGGACATTCATTCGGACACAT 71996 | | || || ||||| || | ||| | || ||||| ||||| || || ||||| Sbjct 1351308 AGCC--TCAAATTCGTCACCGTA-GCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACAT 1351252 Query 71997 CAATGACCACTCTCCAT-CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055 | | ||| || || | | || | || || ||||| || |||||||| |||||||||| Sbjct 1351251 GAGAGTCCATTCGCCGTTCCTC-TCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1351193 Query 72056 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115 | | || || || | | | |||||| ||||| |||||| ||||| |||| Sbjct 1351192 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1351133 Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175 || | | | || | ||||| || || | ||| ||||| | | || || || |||| Sbjct 1351132 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGT 1351073 Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235 | || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| Sbjct 1351072 TACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATAC 1351013 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295 | ||||| | ||||||||| |||| ||| || ||| ||||||| || | | | | Sbjct 1351012 CGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCG 1350954 Query 72296 -ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 || || || || || ||||| || || || | || || || | ||||| ||| Sbjct 1350953 TTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAG 1350894 Query 72355 ATGCCCTCTATACTATCATCCATCAT 72380 || || || || || || ||| |||| Sbjct 1350893 ATACCATCAATGCTGTCCTCCTTCAT 1350868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139166443040