Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 1e-28
>seq3
Length=7630574
Score = 141 bits (156), Expect = 1e-28
Identities = 368/556 (66%), Gaps = 10/556 (2%)
Strand=Plus/Plus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
||| ||||||||||| | | ||| | ||||||||||| | || || ||||| |||||
Sbjct 2145298 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2145357
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
|||||| || ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 2145358 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2145417
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCA-CTTTTGAG 42254
||||| |||| ||| | || || || | |||| || ||||| | || |
Sbjct 2145418 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2145476
Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314
||||||| ||||||||| | ||||| || || || | ||| || ||||| || |
Sbjct 2145477 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2145536
Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374
| | || || | || |||||||| | || || |||| || || ||||
Sbjct 2145537 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2145596
Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434
| || || ||||| || || ||||| |||| ||||||| | ||| || || |
Sbjct 2145597 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2145656
Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494
||||| ||| | | || || || || || ||||| ||| || || || || | |
Sbjct 2145657 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2145716
Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTCCAATCATTGATATCTT 42551
|| || || |||| ||||||| || || || ||||| || | || ||| |
Sbjct 2145717 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2145776
Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611
| || | ||| | || || | ||||| || || || |||||||| || ||||| | ||
Sbjct 2145777 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2145836
Query 42612 AGA--TATCATGATAT 42625
||| ||||| || ||
Sbjct 2145837 AGATCTATCAGGAAAT 2145852
Score = 131 bits (144), Expect = 2e-25
Identities = 449/686 (65%), Gaps = 18/686 (3%)
Strand=Plus/Minus
Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763
|| || || || ||||| || ||||||| || || |||| || || ||||||||
Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1351485
Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823
|| || | |||||| || | || | ||| || ||||| || || ||||
Sbjct 1351484 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCC 1351425
Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883
|| || || || || || | ||||| || |||| | || | ||| || | ||| | |
Sbjct 1351424 TTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA-G 1351366
Query 71884 ACTC-GAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATAT 71937
|| ||||||| || | |||| | ||| ||||| ||||| | | ||| |
Sbjct 1351365 CTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1351309
Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-CCAGGACATTCATTCGGACACAT 71996
| | || || ||||| || | ||| | || ||||| ||||| || || |||||
Sbjct 1351308 AGCC--TCAAATTCGTCACCGTA-GCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACAT 1351252
Query 71997 CAATGACCACTCTCCAT-CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055
| | ||| || || | | || | || || ||||| || |||||||| ||||||||||
Sbjct 1351251 GAGAGTCCATTCGCCGTTCCTC-TCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1351193
Query 72056 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115
| | || || || | | | |||||| ||||| |||||| ||||| ||||
Sbjct 1351192 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1351133
Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175
|| | | | || | ||||| || || | ||| ||||| | | || || || ||||
Sbjct 1351132 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGT 1351073
Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235
| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||||
Sbjct 1351072 TACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATAC 1351013
Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295
| ||||| | ||||||||| |||| ||| || ||| ||||||| || | | | |
Sbjct 1351012 CGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCG 1350954
Query 72296 -ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354
|| || || || || ||||| || || || | || || || | ||||| |||
Sbjct 1350953 TTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAG 1350894
Query 72355 ATGCCCTCTATACTATCATCCATCAT 72380
|| || || || || || ||| ||||
Sbjct 1350893 ATACCATCAATGCTGTCCTCCTTCAT 1350868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671139166443040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |