Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 269 4e-67 >seq3 Length=7630574 Score = 269 bits (298), Expect = 4e-67 Identities = 575/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||||||||| ||||| | || ||| ||||||| Sbjct 2145840 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2145781 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | ||||||||| |||| | | || || || Sbjct 2145780 TCCAAGGATCTCCACGACTGGAACAACCGTTTGACTTCGGACGAGCAATACTTCATCTCC 2145721 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| | || ||||| || | |||||| || |||||||| || || || ||||| || Sbjct 2145720 CACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAG-CG 2145662 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 |||| ||| | || || |||| ||| ||||| || || ||||| ||||||| Sbjct 2145661 ATTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTATGGTTTCCAGATCATGA 2145603 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG- 125315 | |||||| | ||||| |||| ||||| || || || | ||||| || || Sbjct 2145602 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 2145543 Query 125316 --CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || |||| | || ||||| ||||| | ||||| | || | || || || |||| Sbjct 2145542 CCCAGCGTACATAC---CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 2145486 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | | |||| || || |||||| | ||| | || ||||| | || | | || || | Sbjct 2145485 CGGATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTG 2145426 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | || || ||||| ||||| |||||||| ||| ||||| ||||||| ||||||| Sbjct 2145425 CTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCA 2145366 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||||| || |||||||| || |||| |||||| | || ||||| || |||| Sbjct 2145365 AGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGG 2145306 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 | || ||| |||||||||| ||| || | ||| | | | | || | | Sbjct 2145305 GTCTTCACACTGACTTTGCCTGTCTCCT------CCACTCT---CACCTCAAGGGACGTG 2145255 Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 ||||| | | | | || ||||| | ||||||||||| || || || ||||| | Sbjct 2145254 CCAGCAAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTCC 2145195 Query 125674 TAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 | ||||| | || || | || || | |||||||||| ||| || ||| ||||| Sbjct 2145194 TCACCGAGGCTCT-CCCTTGTGCTCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTAC 2145136 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAAC 125789 || || || || || ||||| || || || | | ||| || ||| | ||||| Sbjct 2145135 ATCGAATTCGTCGCCGATCGCCTCCT---CGTGGCTCTCGGCAACGAGAAGGTGTACAAG 2145079 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 ||| || || || || |||||| | ||| || || | || ||||||||||| ||| Sbjct 2145078 TCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTC 2145019 Query 125850 GAGAAG 125855 |||||| Sbjct 2145018 GAGAAG 2145013 Score = 127 bits (140), Expect = 3e-24 Identities = 319/477 (67%), Gaps = 12/477 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 1351063 CAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCACGCCGAC 1351122 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || || | ||| Sbjct 1351123 GTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGCTCGTGAC 1351182 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGT-GGCTA 97054 |||| || || ||| | || ||| | ||||||||||| ||| | || | ||| | Sbjct 1351183 CTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGA-GAGGAACGGCGA 1351241 Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 |||| || ||||||||| || | || ||||| | || |||| || || || || Sbjct 1351242 ATGGACTCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTGCTACGGTGACGAATT 1351301 Query 97115 TGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| |||||| |||||| || | | | |||| || | | Sbjct 1351302 TGAGGCTCTGTACGAAAAGTACGAGAGAGAGGG----TAAGGGTCGCAAGTCTATCAAGG 1351357 Query 97175 ---AGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 |||| || ||| | ||||| | ||| ||| ||| ||||||||||| || | ||| Sbjct 1351358 CTCAGAAGCTTTGGTACGCCATTCTTGA-GGCCCAGACAGAGACTGGAAACCCTTTCATG 1351416 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| | |||||||| ||||||||| || | || |||||| || Sbjct 1351417 CTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAGC 1351476 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||||| |||||||| || || | || ||| | | || || ||| || |||||| Sbjct 1351477 TCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGTTTGC 1351533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059162947040