Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq3 84.2 2e-11
>seq3
Length=7630574
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| ||| |||||| || |||||||| || || | || || | |||||
Sbjct 6114387 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTC 6114445
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||||| | | || | |||||||| ||| || | || |||||||||
Sbjct 6114446 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 6114505
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | ||||| |||| ||||||| ||| | || || || ||
Sbjct 6114506 GATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 6114565
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || || || |||||||||||
Sbjct 6114566 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251179464004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |