Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 107 3e-19 seq2 107 3e-19 >seq3 Length=7630574 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | ||||| |||||||| || ||||||||||| ||||| Sbjct 2422326 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 2422268 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 2422267 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 2422227 Score = 86.0 bits (94), Expect = 1e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 || || |||| |||| |||| | |||| ||||||| || || |||| ||| || || Sbjct 2422160 TACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACGCCGTC 2422101 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||| || |||||||| || || |||||||||||||| | || |||| || || || Sbjct 2422100 ACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCTCTCGACGTCGTTTACGCTCTG 2422041 Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAACTTCGAAT 16720 || || || ||||| | | || ||||| || ||||| | ||| | || ||||| Sbjct 2422040 AAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAAGCAGCTATTTGCACACCGAAT 2421981 Query 16721 GG 16722 || Sbjct 2421980 GG 2421979 >seq2 Length=8818970 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| |||||||| || ||||| ||||| ||||| Sbjct 7472471 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATCCAGGGTATCACAAAGCCTGCTAT 7472413 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 7472412 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 7472372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075196342772