Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-35 >seq3 Length=7630574 Score = 163 bits (180), Expect = 4e-35 Identities = 365/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| |||||||| || | | ||| || ||||||||||| | || || ||||| ||||| Sbjct 2145298 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2145357 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || |||||||| || | || |||||||| || || || || Sbjct 2145358 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2145417 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCA-CTTTTGAG 33493 |||||| |||| ||| | || || || | |||| || ||||| | || | Sbjct 2145418 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2145476 Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553 ||||||| ||||||||| | ||||| || || || | ||| || ||||| || | Sbjct 2145477 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2145536 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 | | || || | || |||||||| | || || |||| || || |||| Sbjct 2145537 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2145596 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 | || || ||||| || || ||||| |||| |||||||| ||||| || || | Sbjct 2145597 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2145656 Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733 ||||| || | | || ||||| || || ||||| ||| || || || || | | Sbjct 2145657 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2145716 Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33790 || || || |||| ||||| | || | | || ||||| || | || ||| | Sbjct 2145717 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2145776 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2145777 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2145836 Query 33851 AGAT 33854 |||| Sbjct 2145837 AGAT 2145840 Score = 143 bits (158), Expect = 3e-29 Identities = 394/590 (67%), Gaps = 18/590 (3%) Strand=Plus/Minus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62956 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1351486 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 || || | ||| || || | || | ||| || ||||| || || ||| Sbjct 1351485 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1351426 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || || ||||| || | ||||| || |||| | || | ||| || | ||| | Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1351367 Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTT----TCTCTTTCGTATAGTGTATAC 63131 | || ||||||| || ||| ||| | |||| ||||| ||||| | ||| Sbjct 1351366 GCTTCTGAGCCTTGAT---AGACTTGCGAC-CCTTACCCTCTCTCTCGTACTTTTCGTAC 1351311 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACAT 63190 | || || ||||| || | || | ||| ||||| ||||| | || ||||| Sbjct 1351310 AGAGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGACCAGGGCATTCGTTGGGGCACAT 1351252 Query 63191 CAACGACCACTCTCCGTCATCCT-TC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 | | ||| || |||| |||| || || || ||||| || |||||||| ||||||||| Sbjct 1351251 GAGAGTCCATTCGCCGT--TCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGA 1351194 Query 63249 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63308 || | || || || | | | ||||| ||||| |||||| ||||| ||| Sbjct 1351193 GCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGG 1351134 Query 63309 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63368 ||| | | | || | ||||| || || | ||| ||||| | | ||||| || ||| Sbjct 1351133 AACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTG 1351074 Query 63369 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63428 || || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||| Sbjct 1351073 TTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATA 1351014 Query 63429 CCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 ||||| || ||||||||||||||| ||| || ||| ||||||| || Sbjct 1351013 CCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT 1350964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947168852640