Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 399 6e-106 >seq3 Length=7630574 Score = 399 bits (442), Expect = 6e-106 Identities = 1149/1744 (66%), Gaps = 40/1744 (2%) Strand=Plus/Plus Query 363436 GGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGC 363495 ||| | |||| ||| ||||||||||||||| | ||||| || ||| |||| ||| | Sbjct 1350682 GGTAAAATTGCTGAGCGCCCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGT 1350741 Query 363496 CCGGATGTTGATGCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGC 363553 ||| |||| | | || ||||| || || | | | || || | ||||| | Sbjct 1350742 GACGATATTGAGCGTGTCTTGGAGACATACAACCTCATGTCAA-GCAAGT-TCTTCACTC 1350799 Query 363554 ACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTC 363613 | || | || || ||| ||| || || || | | || ||| | || || ||||| | Sbjct 1350800 ATGCGAGCCCCACTTTGTTCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCC 1350859 Query 363614 TTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTC 363673 || | | |||||||| || ||| || ||||||| || || || |||| |||||| Sbjct 1350860 TTGTTGATATGAAGGAGGACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCA 1350919 Query 363674 TTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAAC 363732 | |||||||||| || || || ||||| || |||| | ||||| || | | Sbjct 1350920 TGATTTCCAAGATGGCTGGTGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGG-C 1350978 Query 363733 AGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTT 363791 |||||| ||| || || |||| | || || | ||||||||||| |||||||| Sbjct 1350979 TCTTACATCGCCGGTACCAATGG-TACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTT 1351037 Query 363792 TGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 |||| ||||| | ||||||||||||||||| ||||| || || || || || Sbjct 1351038 CAACAACACTGCTCGTTACGTCGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCAT 1351097 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 || || ||||| || ||||| | || ||||| ||||| ||||| || ||| || Sbjct 1351098 CTACCTTGAGCCATGGCACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGG 1351157 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 ||| ||||| | || || ||||| |||||| || |||||| | |||| | ||| || Sbjct 1351158 AAAGGAGGAGGTCCGCGCTCGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCAT 1351217 Query 363972 GAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGT 364029 |||||| || ||| ||| | | | ||| | ||| | ||||| ||||||| || ||| Sbjct 1351218 GAAGCGTGTCGAG--AGGAACGGCGAATGGACTCTCATGTGCCCCAACGAATGCCCTGGT 1351275 Query 364030 CTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 ||| | || | |||||||| | || ||||| ||||||||||| || ||||| Sbjct 1351276 CTTGCTGACTGCTACGGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGT 1351335 Query 364090 AAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 |||| ||| ||| | || || |||||||| |||| ||||| | || | |||| Sbjct 1351336 AAGGGTCGCAAGTCTATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACA 1351395 Query 364150 GAGACAGGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCA 364208 ||||| |||| ||||| | ||| | ||||| ||| ||||| |||||| |||||| | Sbjct 1351396 GAGACTGGAA-ACCCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAA 1351454 Query 364209 GCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | |||||||||| | || | || |||||| || || ||||| ||||||||| ||| | Sbjct 1351455 GAACCTTGGTACCA-TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCC 1351513 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA------ 364321 | || ||| || || || |||||||| || | | || || | || | | Sbjct 1351514 CTGATGAGGTCGCTGTTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTCATCAACTATG 1351573 Query 364322 AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATC 364381 |||||| | | ||| | || | || | || || || | || | ||||| Sbjct 1351574 AAGATGCTTGCTACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATT 1351633 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAA 364436 | ||||| | |||||| || | || || | | || || || ||| || Sbjct 1351634 TGAACAAGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGC-----AA 1351688 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 |||||||| || || |||||||||||||| || || |||||||| | || | || Sbjct 1351689 CATGCGTCACCGACCCATTGGTCTTGGTGTTCAAGGTCTCGCTGATGCCTTCCTTGCCCT 1351748 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | ||| | ||||| || || || ||||||| || || ||| | ||||| || || || Sbjct 1351749 CCGCATGCCCTTTGAGTCTCCCGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCAT 1351808 Query 364557 GTATTTTGCCGCAATGACTGCTTC-GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615 || ||| || | || | || ||| | | | ||| | || || ||||| | Sbjct 1351809 CTACCATGCTGCCCTTACCACGTCTGTGCAACTCGCCAAGGAGGAA-GGTCCCTACTCCA 1351867 Query 364616 CTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675 | | |||| |||||| || |||| | |||||||||| | |||||||||| || Sbjct 1351868 CCTTCAAGGGTTCCCCTGCCTCTGAGGGTATTCTCCAGTTTGACATGTGGAATGTCAAGC 1351927 Query 364676 CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCA 364735 | |||| | ||| | ||||| | || || | || |||| || |||| |||| Sbjct 1351928 CCTCTGATCTTTGGGATTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCA 1351987 Query 364736 AC--TC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACA 364792 || || |||||| || || ||||| || || ||| | ||||| || || |||| Sbjct 1351988 ACAGTCTGCTCGTT---GCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACA 1352044 Query 364793 ACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAAT 364852 |||||||||| || || | || ||| | || |||||| || ||| | || || | Sbjct 1352045 ACGAGTGCTTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGT 1352104 Query 364853 TTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACA 364912 | | ||| || || | || ||||||||||| |||| || || ||| || Sbjct 1352105 TCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGACATGGGTCTTTGGTCCGATG 1352164 Query 364913 GCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAG 364972 ||||||||| ||||| || | ||| |||||| | |||||||| || | || | Sbjct 1352165 CTATGAAGAACCGCATCATTGCTGATAACGGTTCTATCCAGAACATCCCCAACATCCCTG 1352224 Query 364973 AAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATA 365032 || | ||| || | ||||| || || ||||| ||||| |||| | | | | Sbjct 1352225 CCGAGATCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTGTGCAGA 1352284 Query 365033 TGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTC 365092 |||| || || || ||||| || || |||| ||||| | ||| | ||||| Sbjct 1352285 TGGCTGCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGG 1352344 Query 365093 AGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGA 365152 | || ||| | |||| | || |||||| ||| || ||||| |||||| |||| Sbjct 1352345 ACCCTACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGA 1352404 Query 365153 CAGG 365156 | || Sbjct 1352405 CTGG 1352408 Score = 102 bits (112), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACG-TTCATTCGCGGAACG 22493 || ||||| |||||||| | |||||| | |||| |||| ||| || || | || Sbjct 2145492 AAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAA-GAACTCTTCCTTTGCTCAGCG 2145434 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 |||| |||| ||||||| ||||| || || ||||| || || ||| | | ||||| Sbjct 2145433 TCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTT 2145374 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || || |||| | ||||| ||||| | ||||| || ||| | ||| || Sbjct 2145373 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCG 2145314 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||||||||||| || || ||||| ||| Sbjct 2145313 TGATGAGGGTCTTCACACTGACTTTGCCTGT 2145283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353533203128