Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 6e-25
seq2 122 8e-23
seq1 95.1 1e-14
>seq3
Length=7630574
Score = 129 bits (142), Expect = 6e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || || || | ||| |||||||| || |||||||| ||||||
Sbjct 6114369 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6114428
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| |||||||| || || |||| | |||||||||||||| |||
Sbjct 6114429 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6114488
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 6114489 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 6114548
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | ||| | || || || || || || || ||||||||||||||||
Sbjct 6114549 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGA 6114597
>seq2
Length=8818970
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | ||| | ||| |||||||| ||||||||||| ||
Sbjct 2562749 CCACCACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAG 2562808
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| ||| | || || ||||||||||| ||||||
Sbjct 2562809 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2562868
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| || ||||| | || | ||| |||| |||||||
Sbjct 2562869 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACC 2562928
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || || || ||||| || |||||
Sbjct 2562929 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | ||| | ||||||||||| || || ||||| ||
Sbjct 2562977 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAG 2563036
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| ||||||||||| ||| | || || |||||||| ||||| |||
Sbjct 2563037 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGG 2563096
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||||| | || | |||||| | ||||| |
Sbjct 2563097 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACC 2563156
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||||| || || ||||| | || || ||||| |||||||||
Sbjct 2563157 TCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATG 2563204
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | ||| || ||||| || |||||||| |||
Sbjct 2562467 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 2562526
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| ||| | || || ||||||||||| ||||||
Sbjct 2562527 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2562586
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||||| | || | ||| |||| ||||| |
Sbjct 2562587 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACC 2562646
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||| | ||| || ||||| | || || ||||
Sbjct 2562647 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 2562683
>seq1
Length=11717239
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | ||| || ||||| ||||||||||| ||| |||
Sbjct 6373628 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 6373569
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || |||||||| ||||| ||||| || || ||||| ||| || ||||| | |
Sbjct 6373568 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6373509
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | ||||||| |||| ||| | ||| || || || || || || ||||
Sbjct 6373508 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 6373449
Query 131225 AA 131226
||
Sbjct 6373448 AA 6373447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012776399360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |