Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 1e-29
>seq3
Length=7630574
Score = 145 bits (160), Expect = 1e-29
Identities = 391/588 (66%), Gaps = 14/588 (2%)
Strand=Plus/Minus
Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62811
|| || || || ||||| || ||||||| || | ||| |||| || |||||||||||
Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1351486
Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871
|| || | |||||| || | || | ||| || ||||| || || |||
Sbjct 1351485 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1351426
Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931
||| || || ||||| || | ||||| || |||| | || | ||| || | ||| |
Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1351367
Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACA 62987
| || ||||||| || ||| ||| | ||| ||||| ||||| | ||||
Sbjct 1351366 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1351310
Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047
|| || ||||| || | | | || ||||| ||||| | || ||||| |
Sbjct 1351309 GAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGA 1351250
Query 63048 ACGACCACTCTCCGTCATCCT-TC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63105
| ||| || |||| |||| || || || ||||| || |||||||| |||||||||||
Sbjct 1351249 GAGTCCATTCGCCGT--TCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1351192
Query 63106 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165
| || || || | | | ||||| ||||| |||||| ||||| |||||
Sbjct 1351191 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAA 1351132
Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225
| | | | || | ||||| || || | ||| ||||| | | ||||| || |||||
Sbjct 1351131 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1351072
Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285
|| ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||||
Sbjct 1351071 ACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACC 1351012
Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT 63333
||||| ||||||||||| || | ||| || ||| ||||||| ||
Sbjct 1351011 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT 1350964
Score = 141 bits (156), Expect = 1e-28
Identities = 360/544 (66%), Gaps = 8/544 (1%)
Strand=Plus/Plus
Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734
||| |||||||| || | | ||| | ||||||||||| | || || ||||| |||||
Sbjct 2145298 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2145357
Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794
|||||| || ||||| || ||||| ||||| | || ||||| || || || || ||
Sbjct 2145358 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2145417
Query 32795 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCA-CTTTTGAG 32850
||||| |||| ||| | || || || | |||| || ||||| | || |
Sbjct 2145418 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2145476
Query 32851 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 32910
||||||| ||||||||| | ||||| || || || | || || ||||| || |
Sbjct 2145477 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2145536
Query 32911 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 32970
| | || || | || ||||| || | || || |||| || || ||||
Sbjct 2145537 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2145596
Query 32971 TTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC 33030
| || || || || || || |||||||||| |||||||| ||||| || || |
Sbjct 2145597 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2145656
Query 33031 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33090
||||| || | | || ||||| || || ||||| ||| || || || || | |
Sbjct 2145657 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2145716
Query 33091 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33147
|| || || |||| ||||| | || | | || ||||| || | || ||| |
Sbjct 2145717 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2145776
Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207
| || | ||| | || || ||||||| || || ||||||||||| || ||||| | ||
Sbjct 2145777 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2145836
Query 33208 AGAT 33211
||||
Sbjct 2145837 AGAT 2145840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631968318400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |