Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 87.8 2e-12
>seq2
Length=8818970
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| ||||| |||||||| || ||||||| | || || ||||| || |||||||||||
Sbjct 2562681 GTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGACACTATCGAC 2562622
Query 25071 TCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129
| ||| | || | ||| ||||| || || || || |||||||| ||||| | ||
Sbjct 2562621 AACGTCAAGTCCAAGATTCA-GGACAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGAT 2562563
Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189
||| |||||||| || | || || | || || | ||| ||||| || || || ||
Sbjct 2562562 TTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 2562503
Query 25190 ATCCACGCTACA 25201
||| || || ||
Sbjct 2562502 ATCAACCCTTCA 2562491
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || || || ||||||| | || || ||||| ||
Sbjct 2562975 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 2562916
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| || || ||| || ||| || || || || || || |||||||
Sbjct 2562915 GACACTATCGA--CAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACC 2562858
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | ||||| |||||||| || | || || | || || | || ||||
Sbjct 2562857 AGCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCAGACTACA 2562798
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| ||||| || || || || || ||| | || ||
Sbjct 2562797 ACATTCAGAAGGAGTCAACCCTTCATCTCGTCCT 2562764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327978875260
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |