Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 >seq3 Length=7630574 Score = 161 bits (178), Expect = 1e-34 Identities = 375/560 (67%), Gaps = 9/560 (2%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| || || | ||| || || || || || | ||| ||| || | | | Sbjct 2145284 CAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGA 2145343 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||||||||| || || |||||||| ||| || || Sbjct 2145344 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 2145403 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--C 93269 ||||| || ||||| ||||| || |||| ||| | ||||| | || || || | Sbjct 2145404 ATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAA---GGAAGAGTTCTTGTCC 2145460 Query 93270 T-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | ||||||| | |||||||| || || || || ||||| | || || | ||| Sbjct 2145461 TGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCG 2145520 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || || ||||| |||| | | | || ||||| |||||||| | || || || Sbjct 2145521 TTGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTAT 2145580 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 |||| || |||| |||||||| || ||||| || ||||| |||| ||| || | | Sbjct 2145581 GTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGG 2145640 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 ||||| || || |||| ||| || || || |||||||| || || ||||| || Sbjct 2145641 ATCTGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCA 2145700 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC--ATCTTTAA-GCTTATCC 93565 || || ||||| | || || || || | || ||| || | | || | || | | Sbjct 2145701 GCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTC 2145760 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || ||| ||||| || || ||||||| || || | ||||| || || || ||||| Sbjct 2145761 CAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCC 2145820 Query 93626 TTTTTGTACATATCCCATAT 93645 || |||||||| | ||| || Sbjct 2145821 TTCTTGTACATTTGCCAGAT 2145840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860772156960