Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3 161 1e-34
>seq3
Length=7630574
Score = 161 bits (178), Expect = 1e-34
Identities = 375/560 (67%), Gaps = 9/560 (2%)
Strand=Plus/Plus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| |||||||| || || | ||| || || || || || | ||| ||| || | | |
Sbjct 2145284 CAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGA 2145343
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || || || ||||||||||| || || |||||||| ||| || ||
Sbjct 2145344 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 2145403
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--C 93269
||||| || ||||| ||||| || |||| ||| | ||||| | || || || |
Sbjct 2145404 ATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAA---GGAAGAGTTCTTGTCC 2145460
Query 93270 T-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328
| ||||||| | |||||||| || || || || ||||| | || || | |||
Sbjct 2145461 TGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCG 2145520
Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388
|| || ||||| |||| | | | || ||||| |||||||| | || || ||
Sbjct 2145521 TTGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTAT 2145580
Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448
|||| || |||| |||||||| || ||||| || ||||| |||| ||| || | |
Sbjct 2145581 GTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGG 2145640
Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508
||||| || || |||| ||| || || || |||||||| || || ||||| ||
Sbjct 2145641 ATCTGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCA 2145700
Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC--ATCTTTAA-GCTTATCC 93565
|| || ||||| | || || || || | || ||| || | | || | || | |
Sbjct 2145701 GCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTC 2145760
Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625
|| ||| ||||| || || ||||||| || || | ||||| || || || |||||
Sbjct 2145761 CAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCC 2145820
Query 93626 TTTTTGTACATATCCCATAT 93645
|| |||||||| | ||| ||
Sbjct 2145821 TTCTTGTACATTTGCCAGAT 2145840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860772156960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |