Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 138 2e-27 seq2 98.7 2e-15 >seq3 Length=7630574 Score = 138 bits (152), Expect = 2e-27 Identities = 403/615 (66%), Gaps = 17/615 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||| ||||| ||| Sbjct 2145017 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTG 2145076 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | ||| || || |||| || ||| || || || || || | Sbjct 2145077 GACTTGTACACCTTCTCGTTGCCGAGAGCCACGAGGAGGCGATCGGCGACGAATTCGATG 2145136 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | || | |||||| | ||||| || | Sbjct 2145137 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGAGCACAAGGGAGAGCCTCGGTGAGG 2145196 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || | | ||| || || | ||| ||| ||| ||| | | | | Sbjct 2145197 AACTCCTGCTCAATAGAAACGGCATCGGTGATAATGTCCTGGATCATCTGTTTGCTGGCA 2145256 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | || || | |||| ||||| | |||| | ||| |||||||| || Sbjct 2145257 CGTC----CCTTGAGGTGAGAGTGGAGGAGACAGGCAAAGTCAGTGTGAAGACCCTCATC 2145312 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| |||| ||||||||| | | ||| |||||||| | ||||| ||| ||||||| Sbjct 2145313 ACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 2145372 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||||| || ||| | | |||||| || | | |||||||| Sbjct 2145373 GAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAG 2145432 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| |||||| || ||||||||| || | | || ||||| | ||||| Sbjct 2145433 ACGCTGAGCAAAGGAAGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAATCCGCCTT 2145489 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | || || || || | || | ||||| | | |||| |||| ||| Sbjct 2145490 CTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACGCTGGGCAGGGTC 2145549 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| | ||| | ||||| ||||| | || || |||||| || | | || Sbjct 2145550 CTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGAT 2145609 Query 252153 CTGGTAAGCATAGAA 252167 |||| || ||||||| Sbjct 2145610 CTGGAAACCATAGAA 2145624 >seq2 Length=8818970 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 ||||| ||||||||||| || || || || || ||||| |||| |||||||| ||| Sbjct 1715531 ATTGGCCCCAATGGTGCCGGAAAATCGACACTTATCAAGCTCCTTACTGGCGAAACCATT 1715590 Query 280236 GCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 ||| || ||| |||||| |||||| |||| || | |||| || |||||| Sbjct 1715591 CCCAGCACTGGAAAAGTTGAGAAGCACCCCAACTTGCGTATTGGTTACATCAAGCAGCAC 1715650 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||| | | ||| | |||| ||| |||| | ||| |||||||| ||| | |||||||| Sbjct 1715651 GCTCTGGAGCACGTTGAGATGCACTTGGAGAAGACCCCTAACCAGTACCTCCAGTGGCGT 1715710 Query 280356 TA 280357 || Sbjct 1715711 TA 1715712 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 7173631 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 7173690 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| |||||||| || | Sbjct 7173691 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGTGGTCCCAACGGTTCC 7173750 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 7173751 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 7173809 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 7173810 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 7173855 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| |||||||| || || || ||| ||||| |||| | | || Sbjct 7175033 CTCACTCTCGCATGCGCGGTCTGTCCGGCGGTCAGCGTGTCAAGACTGTCCTGGCCGCTT 7175092 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || || | |||||||| |||||||||||||||||||| ||||| Sbjct 7175093 GCTCT-TGGCAGCGACCCCATCTTATCGTTCTTGACGAGCCTACCAACTATCTTGACCGT 7175151 Query 280821 GAGAGCCTGGGCGCTCT 280837 || ||| || ||||| Sbjct 7175152 GACTCCCTCGGTGCTCT 7175168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836747323364