Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 318 1e-81 >seq3 Length=7630574 Score = 318 bits (352), Expect = 1e-81 Identities = 596/860 (69%), Gaps = 28/860 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || |||||||| || || Sbjct 2145840 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2145781 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAA 42415 ||||||| || |||| | || || ||| | |||| | | ||| || Sbjct 2145780 TCCAAGGATCTCCACGACTGGAACA-ACCGTTTGACTTCGGACGAGCAATACTTCATCTC 2145722 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || || |||||||| ||||| |||||||| |||||||||||||| | | Sbjct 2145721 CCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAGCG 2145662 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||| || |||||||| || Sbjct 2145661 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGAT 2145602 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| || ||| || || || | || |||||| ||| || | Sbjct 2145601 GGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTGC 2145542 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | |||||| || ||||| ||| | || || || || |||||| ||||||||||| Sbjct 2145541 CCAGCGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGA 2145482 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||| || |||||| || | | || | | | || | || | || || || | Sbjct 2145481 TTGGGCCATCCGATGGATCCAG-GACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTGCTT 2145423 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || | ||||| ||||| ||||||||| || ||||| || |||||||||||||||||| Sbjct 2145422 TTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGA 2145363 Query 42775 AGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || || || ||||| || || | ||| || ||||| ||||| | || ||||| Sbjct 2145362 AGCGTGGCCTC-ATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGGGT 2145304 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAA 42892 || || | ||||||||||| ||||| ||| |||||| ||| || ||| | || Sbjct 2145303 CTTCACACTGACTTTGCCTGTCTCCTCCACTC---TCACCTCAAGGGACGTGCCAGC-AA 2145248 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 || | ||| || ||| ||||| || ||||| || ||| ||||||||||||| | Sbjct 2145247 ACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTCCTCACCGA 2145188 Query 42953 GTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 | | || ||| ||| | ||| ||||||||||| | |||||||| |||||||| | | Sbjct 2145187 GGCTCT-CCCTTGTGCTCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAAT 2145129 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACGC 43065 |||||||| ||| ||| || ||| |||| || || | ||||| | Sbjct 2145128 TCGTCGCCG---ATCGCCT---CCTCGTGGCTCTCGGCAACGAGAAGGTGTACAAGTCCA 2145075 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | ||| |||||||| |||||||||||||| | | |||||||||||||| ||||||| Sbjct 2145074 CCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGA 2145015 Query 43126 AGCGCGTCGCCGACTACCAG 43145 ||||||| || ||||||||| Sbjct 2145014 AGCGCGTTGCTGACTACCAG 2144995 Score = 300 bits (332), Expect = 3e-76 Identities = 889/1363 (65%), Gaps = 51/1363 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| |||| | || || Sbjct 1352118 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 1352059 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || ||| ||||||| || ||||||| || || || || ||||| || | || Sbjct 1352058 CTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAAC 1351999 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | ||||| ||| || || ||| | ||| ||||| Sbjct 1351998 GAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAATCCCA 1351939 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | ||||| | | | || ||||||||||||||| || | |||| Sbjct 1351938 AAGATC--AGAGGGCTTGACATT-------CCACATGTCAAACTGGAGAATACCCTCAGA 1351888 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388 | | ||| |||| | |||| | ||||||||| || || ||| || | |||| | Sbjct 1351887 GGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGGCGAGTTGCACAGACGT 1351828 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || ||||| || | |||||||||||||||||| |||||||| || || |||| | Sbjct 1351827 GGTA-AGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCCTCGG 1351769 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | ||||| |||| | | |||| | || || || || || || || | | Sbjct 1351768 GAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGACCTTGAACACCAAGAC 1351709 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 | ||||||| ||| ||| ||||| | || || | || ||||| |||| ||| Sbjct 1351708 CAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGTGGTTGACGT 1351649 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | |||||| | |||||| | | | ||| ||| |||| || |||| Sbjct 1351648 CGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCTTCTTGAAGT 1351589 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC---GAC-- 244683 |||| | | | ||| || | || ||| || |||||| ||| Sbjct 1351588 CGTA---GCAAGCATCTTCATAGTTGATGA--------AA------GAGGGCAGAGACAA 1351546 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 | ||| |||||||| || || ||||| || | | | ||| | | ||||| ||||| Sbjct 1351545 GGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCA 1351486 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||||| || |||||| || |||| || || ||| |||| |||||| || Sbjct 1351485 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1351426 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || || ||||| |||||| | || | | || ||| || Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1351366 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| | | ||||| |||| |||||| |||||| |||||| || Sbjct 1351365 CTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 1351306 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGA 244981 ||| || ||| || || || | || || ||||| || | |||||||||||| Sbjct 1351305 CTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTG--GGGCACATGAGA 1351248 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||| |||||| || ||| | || |||||| || || |||||||| || ||| || Sbjct 1351247 GTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCAGG 1351188 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 || ||||| | | | ||| ||| || |||||| | || || | || || Sbjct 1351187 AACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCG 1351128 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 ||||||||| ||||||| ||||| | ||||| |||| ||| || || |||||||| || Sbjct 1351127 AAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCA 1351068 Query 245162 CCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 |||||||| | | | ||||| |||||| | ||||| | || || || || Sbjct 1351067 CCCTGGTCGA----CGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACC 1351012 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGAT 245274 ||| || || ||||| || |||||| | ||| || | | || ||| | | | Sbjct 1351011 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTT 1350952 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | ||| | || || || |||||| || | ||| || |||||| ||| || Sbjct 1350951 ---TAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTA 1350895 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 || || || ||||||||| |||||| | | || ||||| || || ||||| |||| Sbjct 1350894 GATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTG 1350835 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| | | | |||||||| ||||||||| || || || ||| Sbjct 1350834 TGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAG 1350792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339152783040