Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 114 3e-20 seq2 89.7 1e-12 >seq3 Length=7630574 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||||| | |||||| ||||||||||||||||| ||||| ||| | || | Sbjct 2145165 GGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCCGATCGCCTCCTCGTG 2145106 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || | ||||| |||||||| |||| ||||| || | ||| |||||| ||| Sbjct 2145105 GCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATC 2145046 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || ||| || || || ||||||||||| ||||| || Sbjct 2145045 TCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 2145008 >seq2 Length=8818970 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| |||| || |||||||| || || || || || | || Sbjct 7173804 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 7173745 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || ||||| |||||||| || | |||||||| ||| || | || | ||| || Sbjct 7173744 GTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGGAGGTGAGTCTGGTTGAG 7173685 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||||| || |||| || || ||||| || ||| | || ||||||||||| Sbjct 7173684 AAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAAAGATCCTCACC 7173631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879943477400