Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=8818970 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || ||||||||||| |||| || ||| || |||| Sbjct 2562764 AGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGGCCGTCC 2562823 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| |||| | ||||||||||| ||||| || || || || || Sbjct 2562824 TCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 2562883 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | || | |||| Sbjct 2562884 TGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTC 2562943 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| |||||||| Sbjct 2562944 TTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || || || || ||||| |||| || ||| || | || Sbjct 2562992 AGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCATCC 2563051 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| |||| | |||||||| || || || || || || || || Sbjct 2563052 TCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCC 2563111 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| | || || || | || | ||| Sbjct 2563112 TGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTC 2563171 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 2563172 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2563203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || ||||| || || |||||||| || | || ||| || |||| Sbjct 2562481 AAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTC 2562540 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||||||||| |||| | ||||||||||| ||||| || || || || || Sbjct 2562541 CTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 2562600 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | || || || | || | ||| Sbjct 2562601 CTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGT 2562660 Query 64411 CTTGCCGGTCAAAGTTTTTACGA 64433 |||||||||||| || || |||| Sbjct 2562661 CTTGCCGGTCAAGGTCTTGACGA 2562683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644775017760