Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 185 9e-42 >seq3 Length=7630574 Score = 185 bits (204), Expect = 9e-42 Identities = 504/762 (66%), Gaps = 10/762 (1%) Strand=Plus/Plus Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-GATGA 93955 ||| || |||||||||| || ||||| ||| ||| | || || || ||||| | ||| Sbjct 1350807 CCCCACTTTGTTCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGA 1350866 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | |||| ||| ||| || || | ||| | ||||||| ||||| | || | Sbjct 1350867 T-ATGAAGGAGGACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTT 1350925 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || || || || || || | | | |||| | ||||||| || || |||| Sbjct 1350926 CCAAGATGGCTGGTGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGGCTCTTACA 1350985 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 || |||||||||||| || |||||||| | || || ||||| || || ||||||||| Sbjct 1350986 TCGCCGGTACCAATGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACA 1351045 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || || ||||| |||||||||||| | | | ||| | ||||| |||| || | Sbjct 1351046 CTGCTCGTTACGTCGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTG 1351105 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||| |||||||| ||||| | ||| | || || |||||||||||||| || || Sbjct 1351106 AGCCATGGCACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGG 1351165 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 || | || | ||||| ||| ||||| ||| | || || ||||| ||||| || | Sbjct 1351166 AGGTCCGCGCTCGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTG 1351225 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACG 94375 |||||| ||| || |||| ||| | || ||||| ||||| || || || | ||| Sbjct 1351226 TCGAGAGGAACGGCGAATGGACTCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACT 1351285 Query 94376 TTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGG 94434 | || | || ||||| | |||| | ||||| |||| |||| | Sbjct 1351286 GCTACGG-TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGGGTCGC 1351344 Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 ||| ||| | ||| |||||| ||| | || | || | ||| ||||| || Sbjct 1351345 AAGTCTATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGA 1351404 Query 94495 ACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 | || | ||| | | |||||| | ||| ||| |||| |||||| || |||| || Sbjct 1351405 AACCCTTTCATGCTCTACAAGGATCACTG-CAATCGCAAGAGCAACCAAAAGAACCTTGG 1351463 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT--TCTCCGGACGAG 94611 ||| ||||| || |||||||| ||||| | || ||||| | || || ||| Sbjct 1351464 TACCATCCGAAGCTCCAACCTGTGCACTGAGATCATTGA--ATACTGCGCCCCTGATGAG 1351521 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTC 94653 | ||||| || ||||| | |||| | ||| || ||||| Sbjct 1351522 GTCGCTGTTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTC 1351563 Score = 125 bits (138), Expect = 7e-24 Identities = 260/384 (68%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 |||| ||| | ||||| ||| | ||| ||| |||||||| | ||| | || |||||| Sbjct 1351892 AGGGTATTCTCCAGTTTGACATGTGGAATGTCAAGCCCTCTGATCTTTGGGATTGGGAAC 1351951 Query 95054 CTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGC 95113 | || || | ||||| | | |||||| | ||| ||||| || || || |||| Sbjct 1351952 CCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGTCTGCTCGTTGCTCCTATGC 1352011 Query 95114 CCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCA 95173 | || ||| || ||||||| |||||||||||||||| || || || | |||||||| Sbjct 1352012 CTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGCCTTACACCTCCA 1352071 Query 95174 ACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCT-A 95232 || | ||| | | || || || || || || |||| || ||||| || || | Sbjct 1352072 ACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCA 1352131 Query 95233 CGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACC----AACTGCTACG 95288 || | || || | ||||| | ||| || | ||||||| | |||| Sbjct 1352132 AGGATCTTGTCGAC-ATGGGTCTTTGGTCCGATGCTATGAAGAACCGCATCATTGCT--- 1352187 Query 95289 CGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAA 95348 | ||||| || ||||||||||||| | || || | || |||||||| || ||||| Sbjct 1352188 -GATAACGGTTCTATCCAGAACATCCCCAACATCCCTGCCGAGATCAAGGCTCTGTACAA 1352246 Query 95349 GACCGTGTGGGAGATCCCGCAGCG 95372 ||| ||||||||||| | ||||| Sbjct 1352247 GACTGTGTGGGAGATTTCTCAGCG 1352270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723175263840