Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-24 >seq3 Length=7630574 Score = 127 bits (140), Expect = 3e-24 Identities = 1066/1704 (63%), Gaps = 57/1704 (3%) Strand=Plus/Minus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 |||| || |||||||||||||| || |||||||| || |||||||| || | ||| Sbjct 1352432 GCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGC 1352373 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668 || || | |||| | || || | |||| | ||| | | || || ||| Sbjct 1352372 ATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGA 1352313 Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCC 115725 || |||||| || || || || ||||| | |||| ||| || || ||| Sbjct 1352312 TCAATGAAGGCACCACGGTCAGCAGCCATCTG---CACAACCTGTCGCTGAGAAATCTCC 1352256 Query 115726 CACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAG 115785 |||||||| |||| || ||| || || | ||||| | ||| || |||||||| Sbjct 1352255 CACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAA 1352196 Query 115786 CC---ACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTG 115842 || | | || ||| || | | ||||||| | | ||||| ||||| || | Sbjct 1352195 CCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACA 1352139 Query 115843 AGATCCTCCA----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCT 115898 ||||||| | | ||| | |||||||| ||||| || || ||| || | Sbjct 1352138 AGATCCTTGAGAAGCCAGGGG----TTGACAACCTGGAACTCGCCAGCAAGGACTCGGCG 1352083 Query 115899 CAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGT 115958 | |||||||||| ||||| |||||||||||||| ||||| || | || || | || Sbjct 1352082 TTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGT 1352023 Query 115959 GGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCG 116018 ||| || ||||| || || | ||| || |||||||||| ||| | | | Sbjct 1352022 ACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATC 1351963 Query 116019 TTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || ||||| ||||| | | || | || | || | | |||||| |||||| Sbjct 1351962 CTCTCGGAGGGGTTCCCAATCCCAAAGATCAG--AGGGCTTGACATTCCACATGTCAAAC 1351905 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 ||||| ||||| | || || || || |||| || || || || || || ||| Sbjct 1351904 TGGAGAATACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTG 1351845 Query 116137 GCCAATT-CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 || | || | || || ||||| || || || || ||||| || || | || Sbjct 1351844 GCGAGTTGCACAG-ACGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTT 1351786 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || | |||||| || ||||| | | ||| || || |||| ||||| Sbjct 1351785 CAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAG 1351726 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 |||||| ||||| || ||||| || || || | ||| || || ||||| | || Sbjct 1351725 ACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGAC 1351666 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || || ||||| | | | || | ||| | ||||| | |||| || Sbjct 1351665 AGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTC 1351606 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGC 116432 || ||||| | | | || | || || |||||| |||| | || || | Sbjct 1351605 GTGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATGAAAGAGGGCAGAGA 1351549 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 | || || || || || |||| | |||||| | ||| || || || || || Sbjct 1351548 CAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGT 1351489 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 |||| || || || ||||| || | ||||||||| || ||| || || Sbjct 1351488 GCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTG 1351429 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 ||||||||||||||| | || | || ||||| || |||| || ||||| || | ||| Sbjct 1351428 ATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCA 1351369 Query 116613 TA-CATCGGCGGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 | | || | | | || | | | ||| | ||||| |||||||||| ||| Sbjct 1351368 AAGCTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCTCGTACTTTTCGTAC 1351311 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGA 116728 || |||||||| || ||| || ||| || | || || || || || | || || | Sbjct 1351310 AGAGCCTCAAATTCGTCA-CCGTAGCAGTCAGCAAGACCAGG-GCATTCGTTGGGGCACA 1351253 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 ||||| ||||| || | ||| || ||||||||||| || || |||||||| || | Sbjct 1351252 TGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1351193 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 || ||| || || ||| ||| | || || | || || || || | || | | Sbjct 1351192 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1351133 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGC 116902 | || | || || |||||||| || || ||||| | |||| | || | |||| Sbjct 1351132 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTG- 1351074 Query 116903 GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 |||| |||||| || || | || || ||| || || || ||||| |||| | Sbjct 1351073 --TTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAA 1351016 Query 116963 TACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTG 117020 |||| | || ||||| || || ||| || ||| | |||| | || ||| Sbjct 1351015 TACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCC--AGTGGCACGGATTCGGTG 1350958 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 | || | |||||||| || ||| ||| || || || || | |||| | | Sbjct 1350957 GGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATC 1350898 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 |||||| ||||| || ||| |||| | | | |||||||| || | || || Sbjct 1350897 GTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGG 1350838 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGAC 117198 | ||| ||||| |||||||| | || || |||| || ||| | | |||| ||| Sbjct 1350837 CTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGA--AGAACTTGCTTGAC 1350780 Query 117199 ATCTTATCGTAGGTCTCCAAGACA 117222 || | ||| |||||||||||| Sbjct 1350779 ATGAGGTTGTATGTCTCCAAGACA 1350756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507169324640