Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 seq2 100 7e-16 seq1 89.7 1e-12 >seq3 Length=7630574 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| || || |||||||| |||| ||||||||| || || Sbjct 6114375 CGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 6114434 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| || |||||||||||||| || || Sbjct 6114435 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCC 6114494 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 6114495 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGG 6114554 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || ||||| || Sbjct 6114555 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 6114592 >seq2 Length=8818970 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || || || |||||||| || | ||||||||| | | || Sbjct 2562755 CGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTA 2562814 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| |||||||| || | ||||||||||| ||| || || Sbjct 2562815 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCC 2562874 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | || || || || | Sbjct 2562875 TCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACCTCAAGG 2562934 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 2562935 GTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTG 2562972 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || || || ||||| |||| ||||||||| | | || Sbjct 2562473 CGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 2562532 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| |||||||| || | ||||||||||| ||| || || Sbjct 2562533 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCC 2562592 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||||| | || || || || | Sbjct 2562593 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGG 2562652 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 2562653 GTGATGGTCTTGCCGGT 2562669 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||||||||||||||| |||| |||||||| | | || Sbjct 2562983 CGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGTA 2563042 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| |||||||| || | |||||||| ||||| || || Sbjct 2563043 CGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGGATACCC 2563102 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| || || | || || || || | Sbjct 2563103 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACCTCGAGG 2563162 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || || || || || Sbjct 2563163 GTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTG 2563200 >seq1 Length=11717239 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| |||||||||| Sbjct 6373628 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 6373569 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||| ||||| || || || ||||| ||||| ||| || | Sbjct 6373568 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6373509 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 6373508 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 6373449 Query 199620 AA 199621 || Sbjct 6373448 AA 6373447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921539580268